Hi,
I'm running Tracula on a longitudinal dataset and it's failing at the preproc stage for one subject with the following message:
INFO: Distances between consecutive points in test subject's space are 16 13 12 14 WARN: Could not find satisfactory control point fit - try 4967 Finding center streamline INFO: Step is 3 voxels WARN: Turning off deviation check for center streamline INFO: Step is 3 voxels WARN: Turning off FA check for center streamline INFO: Step is 3 voxels WARN: Turning off overlap check for center streamline INFO: Step is 3 voxels WARN: All checks already off. Exiting. Selecting 5 points on center streamline ERROR: Selected streamline has fewer than 5 points Linux zorii.nmr.mgh.harvard.edu 3.10.0-1062.4.3.el7.x86_64 #1 SMP Wed Nov 13 23:58:53 UTC 2019 x86_64 x86_64 x86_64 GNU/Linux
trac-preproc exited with ERRORS at Wed Oct 28 04:11:51 EDT 2020
It looks like the problem is with one specific pathway. I checked the brainmask and the inter and intra-subject registrations and they all look fine to me, so I'm not sure what else to check. The trac-all.log file is quite large, I attempted to attach it in this email several times, but it always gets rejected, so I'm not attaching it for now. I would greatly appreciate any advice!
Best, Yasemin
Hi Yasemin - If you upload all the tracula output files for me here, I'll take a look: https://gate.nmr.mgh.harvard.edu/filedrop2/
Please include all the output directories for this one subject in one zip file. Thanks!
Anastasia. ________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Hasimoglu, Yasemin YHASIMOGLU@mgh.harvard.edu Sent: Thursday, October 29, 2020 11:47 AM To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] trac-preproc error
Hi,
I'm running Tracula on a longitudinal dataset and it's failing at the preproc stage for one subject with the following message:
INFO: Distances between consecutive points in test subject's space are 16 13 12 14 WARN: Could not find satisfactory control point fit - try 4967 Finding center streamline INFO: Step is 3 voxels WARN: Turning off deviation check for center streamline INFO: Step is 3 voxels WARN: Turning off FA check for center streamline INFO: Step is 3 voxels WARN: Turning off overlap check for center streamline INFO: Step is 3 voxels WARN: All checks already off. Exiting. Selecting 5 points on center streamline ERROR: Selected streamline has fewer than 5 points Linux zorii.nmr.mgh.harvard.edu 3.10.0-1062.4.3.el7.x86_64 #1 SMP Wed Nov 13 23:58:53 UTC 2019 x86_64 x86_64 x86_64 GNU/Linux
trac-preproc exited with ERRORS at Wed Oct 28 04:11:51 EDT 2020
It looks like the problem is with one specific pathway. I checked the brainmask and the inter and intra-subject registrations and they all look fine to me, so I'm not sure what else to check. The trac-all.log file is quite large, I attempted to attach it in this email several times, but it always gets rejected, so I'm not attaching it for now. I would greatly appreciate any advice!
Best, Yasemin
Hi Anastasia,
I uploaded the files. Let me know if you have trouble viewing them!
Best, Yasemin ________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Yendiki, Anastasia AYENDIKI@mgh.harvard.edu Sent: Monday, November 2, 2020 10:57 PM To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] trac-preproc error
Hi Yasemin - If you upload all the tracula output files for me here, I'll take a look: https://gate.nmr.mgh.harvard.edu/filedrop2/
Please include all the output directories for this one subject in one zip file. Thanks!
Anastasia. ________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Hasimoglu, Yasemin YHASIMOGLU@mgh.harvard.edu Sent: Thursday, October 29, 2020 11:47 AM To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] trac-preproc error
Hi,
I'm running Tracula on a longitudinal dataset and it's failing at the preproc stage for one subject with the following message:
INFO: Distances between consecutive points in test subject's space are 16 13 12 14 WARN: Could not find satisfactory control point fit - try 4967 Finding center streamline INFO: Step is 3 voxels WARN: Turning off deviation check for center streamline INFO: Step is 3 voxels WARN: Turning off FA check for center streamline INFO: Step is 3 voxels WARN: Turning off overlap check for center streamline INFO: Step is 3 voxels WARN: All checks already off. Exiting. Selecting 5 points on center streamline ERROR: Selected streamline has fewer than 5 points Linux zorii.nmr.mgh.harvard.edu 3.10.0-1062.4.3.el7.x86_64 #1 SMP Wed Nov 13 23:58:53 UTC 2019 x86_64 x86_64 x86_64 GNU/Linux
trac-preproc exited with ERRORS at Wed Oct 28 04:11:51 EDT 2020
It looks like the problem is with one specific pathway. I checked the brainmask and the inter and intra-subject registrations and they all look fine to me, so I'm not sure what else to check. The trac-all.log file is quite large, I attempted to attach it in this email several times, but it always gets rejected, so I'm not attaching it for now. I would greatly appreciate any advice!
Best, Yasemin
freesurfer@nmr.mgh.harvard.edu
-
Hasimoglu, Yasemin -
Yendiki, Anastasia