Hi Pedro, you should run it through recon-all and see how the automatic skull stripping does, then correct it if necessary. doug On 01/28/2013 02:08 PM, Pedro Rosa wrote:

Dear all, I am currently working on a 1.5T SPGR 1.5mm MRI longitudinal dataset, and I would like to know if one is expected to manually skull strip the images before de recon -all procedure. I am aware that the image quality may be a limiting factor for the freesurfer processing. Regards, Pedro Rosa. _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer