Oh yeah... That could actually be the problem! Thank you so much! Vale ________________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edu [freesurfer-bounces@nmr.mgh.harvard.edu] on behalf of Bruce Fischl [fischl@nmr.mgh.harvard.edu] Sent: Monday, November 05, 2018 4:33 PM To: Freesurfer support list Subject: Re: [Freesurfer] help with subjects concatenation/dimension inconsistency error

Hi Valeria

that means there is a mismatch between the surface overlay and the surface. Maybe you sampled:

/autofs/space/alicudi_002/users/mscat/users/caterina/3T/recons_fsv5.3/Ctrl034_R01_07/surf/overlay/rh.T1_mp2rage_depth0.5_fwhm3.mgh

to the surface then recreated the surfaces after editing?

cheers Bruce

On Mon, 5 Nov 2018, Barletta, Valeria wrote:

Dear FreeSurfers, I am trying to apply surface processes to concatenate my cohort, but for some subjects I am getting this error:

mri_surf2surf --srcsubject Ctrl034_R01_07 --srchemi rh --srcsurfreg sphere.reg --trgsubject fsaverage --trghemi rh --trgsurfreg sphere.reg --tval /autofs/space/alicudi_002/users/mscat/users/valeria/2017_CME_MTR_PET/2017_MTR_PET/T1/allSubj/tmp.mris_preproc.61312/Ctrl034_R01_07.18.mgh --sval /autofs/space/alicudi_002/users/mscat/users/caterina/3T/recons_fsv5.3/Ctrl034_R01_07/surf/overlay/rh.T1_mp2rage_depth0.5_fwhm3.mgh --noreshape --no-cortex ERROR: dimension inconsistency in source data Number of surface vertices = 138446 Number of value vertices = 137970 Source registration surface changed to sphere.reg Target registration surface changed to sphere.reg srcsubject = Ctrl034_R01_07 srcval = /autofs/space/alicudi_002/users/mscat/users/caterina/3T/recons_fsv5.3/Ctrl034_R01_07/surf/overlay/rh.T1_mp2rage_depth0.5_fwhm3.mgh srctype = trgsubject = fsaverage trgval = /autofs/space/alicudi_002/users/mscat/users/valeria/2017_CME_MTR_PET/2017_MTR_PET/T1/allSubj/tmp.mris_preproc.61312/Ctrl034_R01_07.18.mgh trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = (null) label-trg = (null) OKToRevFaceOrder = 1 Reading source surface reg /autofs/space/alicudi_002/users/mscat/users/caterina/3T/recons_fsv5.3/Ctrl034_R01_07/surf/rh.sphere.reg Loading source data

And the script running stops immediately after. I already tried to relaunch the -autorecon2 -autorecon3 command for those subjects, since we already had this kind of issue in the past, but it didn't work. Do you have any idea of what could be the problem? Thank you very much, Valeria _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

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