Hi FS Devs,
Would it be possible to add an "append" flag for use with aparcstats2table and asegstats2table? If I understand their usage correctly, each time one of them are run they will create (or overwrite) a new file. Not urgent but would be useful.
Thanks, Mitch
I would like to confirm that this is what you have in mind:
1. the new '-append' flag will work with '--tablefile=OUTPUTFILE' 2. when same OUTPUTFILE is specified, new stats output will be appended to the end of file
Best,
Yujing
From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu On Behalf Of Horn, Mitchell Jacob Sent: Tuesday, December 12, 2023 10:10 AM To: freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] aparcstats2table - append option
Hi FS Devs,
Would it be possible to add an "append" flag for use with aparcstats2table and asegstats2table? If I understand their usage correctly, each time one of them are run they will create (or overwrite) a new file. Not urgent but would be useful.
Thanks, Mitch
Exactly.
My understanding (and correct me if I'm wrong) is that both commands create/overwrite the specified --tablefile each time it's run.
Best, Mitch
From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu On Behalf Of Huang, Yujing Sent: Monday, December 18, 2023 8:55 AM To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] aparcstats2table - append option
I would like to confirm that this is what you have in mind:
1. the new '-append' flag will work with '--tablefile=OUTPUTFILE' 2. when same OUTPUTFILE is specified, new stats output will be appended to the end of file
Best,
Yujing
From: freesurfer-bounces@nmr.mgh.harvard.edumailto:freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edumailto:freesurfer-bounces@nmr.mgh.harvard.edu> On Behalf Of Horn, Mitchell Jacob Sent: Tuesday, December 12, 2023 10:10 AM To: freesurfer@nmr.mgh.harvard.edumailto:freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] aparcstats2table - append option
Hi FS Devs,
Would it be possible to add an "append" flag for use with aparcstats2table and asegstats2table? If I understand their usage correctly, each time one of them are run they will create (or overwrite) a new file. Not urgent but would be useful.
Thanks, Mitch
'--append' option is added to aparcstats2table and asegstats2table. It should be available tomorrow in Freesurfer dev version.
From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu On Behalf Of Horn, Mitchell Jacob Sent: Monday, December 18, 2023 9:06 AM To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] aparcstats2table - append option
Exactly.
My understanding (and correct me if I'm wrong) is that both commands create/overwrite the specified --tablefile each time it's run.
Best, Mitch
From: freesurfer-bounces@nmr.mgh.harvard.edumailto:freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edumailto:freesurfer-bounces@nmr.mgh.harvard.edu> On Behalf Of Huang, Yujing Sent: Monday, December 18, 2023 8:55 AM To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edumailto:freesurfer@nmr.mgh.harvard.edu> Subject: Re: [Freesurfer] aparcstats2table - append option
I would like to confirm that this is what you have in mind:
1. the new '-append' flag will work with '--tablefile=OUTPUTFILE' 2. when same OUTPUTFILE is specified, new stats output will be appended to the end of file
Best,
Yujing
From: freesurfer-bounces@nmr.mgh.harvard.edumailto:freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edumailto:freesurfer-bounces@nmr.mgh.harvard.edu> On Behalf Of Horn, Mitchell Jacob Sent: Tuesday, December 12, 2023 10:10 AM To: freesurfer@nmr.mgh.harvard.edumailto:freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] aparcstats2table - append option
Hi FS Devs,
Would it be possible to add an "append" flag for use with aparcstats2table and asegstats2table? If I understand their usage correctly, each time one of them are run they will create (or overwrite) a new file. Not urgent but would be useful.
Thanks, Mitch
Wow that was fast! Thanks! -Mitch ________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Huang, Yujing YHUANG43@mgh.harvard.edu Sent: Monday, December 18, 2023 2:18:19 PM To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] aparcstats2table - append option
'--append' option is added to aparcstats2table and asegstats2table. It should be available tomorrow in Freesurfer dev version.
From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu On Behalf Of Horn, Mitchell Jacob Sent: Monday, December 18, 2023 9:06 AM To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] aparcstats2table - append option
Exactly.
My understanding (and correct me if I’m wrong) is that both commands create/overwrite the specified --tablefile each time it’s run.
Best,
Mitch
From: freesurfer-bounces@nmr.mgh.harvard.edumailto:freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edumailto:freesurfer-bounces@nmr.mgh.harvard.edu> On Behalf Of Huang, Yujing Sent: Monday, December 18, 2023 8:55 AM To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edumailto:freesurfer@nmr.mgh.harvard.edu> Subject: Re: [Freesurfer] aparcstats2table - append option
I would like to confirm that this is what you have in mind:
1. the new ‘—append’ flag will work with ‘--tablefile=OUTPUTFILE’ 2. when same OUTPUTFILE is specified, new stats output will be appended to the end of file
Best,
Yujing
From: freesurfer-bounces@nmr.mgh.harvard.edumailto:freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edumailto:freesurfer-bounces@nmr.mgh.harvard.edu> On Behalf Of Horn, Mitchell Jacob Sent: Tuesday, December 12, 2023 10:10 AM To: freesurfer@nmr.mgh.harvard.edumailto:freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] aparcstats2table - append option
Hi FS Devs,
Would it be possible to add an “append” flag for use with aparcstats2table and asegstats2table? If I understand their usage correctly, each time one of them are run they will create (or overwrite) a new file. Not urgent but would be useful.
Thanks,
Mitch
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Hi FS Devs,
Would it be possible to add an “append” flag for use with aparcstats2table and asegstats2table? If I understand their usage correctly, each time one of them are run they will create (or overwrite) a new file. Not urgent but would be useful.
Thanks,
Mitch
freesurfer@nmr.mgh.harvard.edu
-
Horn, Mitchell Jacob -
Huang, Yujing -
Siegel-Ramsay, Jennifer