External Email - Use Caution
Hello there!
I'm hoping that someone can resolve this issue which I'm having. To me it seems that the pipeline is looking for ../surf/autodet.gw.stats.lh.dat, and I can confirm that it does not exist.
Is there a quick solution? Everything in recon-all was functioning without error up to this point.
The error is as follows:
mri_vol2vol done #-------------------------------------------- #@# c2hWhiteSurfs lh Thu Jul 4 23:07:31 EDT 2024 cd /project/6001995/Shmuel_Mendola/data/MGH/HCPNaming/control/05_scan1/T1w/05/mri mris_place_surface --adgws-in ../surf/autodet.gw.stats.lh.dat --seg rawavg.aseg.presurf.mgz --wm rawavg.wm.mgz --invol rawavg.brain.finalsurfs.mgz --lh --i ../surf/lh.white.preaparc.rawavg --o ../surf/lh.white.rawavg --white --nsmooth 0 --rip-label ../label/lh.cortex.label --rip-bg --rip-wmsa --rip-surf ../surf/lh.white.preaparc.rawavg --aparc ../label/lh.aparc.annot ERROR: reading ../surf/autodet.gw.stats.lh.dat ERROR: Linux bc11246.int.ets1.calculquebec.ca 4.18.0-513.24.1.el8_9.x86_64 #1 SMP Thu Apr 4 18:13:02 UTC 2024 x86_64 GNU/Linux
recon-all -s 05 exited with ERRORS at Thu Jul 4 23:07:32 EDT 2024
To report a problem, see http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
Yours truly,
Austin Cooper
BEng - University of Guelph PBD - Cognitive Science - Carleton University PhD Candidate - Neuroscience - McGill University
Can you send complete recon-all.log? Maybe AutoDetGWStats didn’t run?
Yujing
From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu On Behalf Of Austin Cooper Sent: Monday, July 8, 2024 11:49 AM To: freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] Unknown recon-all error - ERROR: reading ../surf/autodet.gw.stats.lh.dat
External Email - Use Caution Hello there!
I'm hoping that someone can resolve this issue which I'm having. To me it seems that the pipeline is looking for ../surf/autodet.gw.stats.lh.dat, and I can confirm that it does not exist.
Is there a quick solution? Everything in recon-all was functioning without error up to this point.
The error is as follows:
mri_vol2vol done #-------------------------------------------- #@# c2hWhiteSurfs lh Thu Jul 4 23:07:31 EDT 2024 cd /project/6001995/Shmuel_Mendola/data/MGH/HCPNaming/control/05_scan1/T1w/05/mri mris_place_surface --adgws-in ../surf/autodet.gw.stats.lh.dat --seg rawavg.aseg.presurf.mgz --wm rawavg.wm.mgz --invol rawavg.brain.finalsurfs.mgz --lh --i ../surf/lh.white.preaparc.rawavg --o ../surf/lh.white.rawavg --white --nsmooth 0 --rip-label ../label/lh.cortex.label --rip-bg --rip-wmsa --rip-surf ../surf/lh.white.preaparc.rawavg --aparc ../label/lh.aparc.annot ERROR: reading ../surf/autodet.gw.stats.lh.dat ERROR: Linux bc11246.int.ets1.calculquebec.ca 4.18.0-513.24.1.el8_9.x86_64 #1 SMP Thu Apr 4 18:13:02 UTC 2024 x86_64 GNU/Linux
recon-all -s 05 exited with ERRORS at Thu Jul 4 23:07:32 EDT 2024
To report a problem, see http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
Yours truly,
Austin Cooper
BEng - University of Guelph PBD - Cognitive Science - Carleton University PhD Candidate - Neuroscience - McGill University
freesurfer@nmr.mgh.harvard.edu
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Austin Cooper -
Huang, Yujing