Thanks Louis and Bruce. One more question: Is there any paper that outlines the boundaries of the FreeSurfer version of the Hippocampus.

thanks so much,

Alan

On Thu, Dec 5, 2013 at 3:49 PM, Louis Nicholas Vinke < vinke@nmr.mgh.harvard.edu> wrote:

Hi Alan, You can use mri_binarize to pull it out of the aseg.mgz. FYI: Once loaded into freeview you can also generate an isosurface for the hippocampus label in the 3D view. -Louis

On Thu, 5 Dec 2013, Alan Francis wrote:

Hi Bruce et al,

...

Is it possible to load just the Hippocampal mask/ROI from the ASEG onto a brain in Freeview?

thanks,

Alan

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Thanks Bruce.

On Fri, Dec 6, 2013 at 2:51 PM, Bruce Fischl fischl@nmr.mgh.harvard.eduwrote:

Hi Alan

yes, this one:

https://surfer.nmr.mgh.harvard.edu/ftp/articles/fischl02-labeling.pdf

although it is based on the CMA manual definitions

cheers Bruce

On Fri, 6 Dec 2013, Alan Francis wrote:

Thanks Louis and Bruce. One more question: Is there any paper that

...

outlines the boundaries of the FreeSurfer version of the Hippocampus.

thanks so much,

Alan

On Thu, Dec 5, 2013 at 3:49 PM, Louis Nicholas Vinke vinke@nmr.mgh.harvard.edu wrote: Hi Alan, You can use mri_binarize to pull it out of the aseg.mgz. FYI: Once loaded into freeview you can also generate an isosurface for the hippocampus label in the 3D view. -Louis

  On Thu, 5 Dec 2013, Alan Francis wrote:

        Hi Bruce et al,

        Is it possible to load just the Hippocampal mask/ROI
        from the ASEG onto a brain in Freeview?

        thanks,

        Alan

The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.