Try using dcm2niix (not part of FreeSurfer) to convert to nifti

On 9/4/19 3:44 PM, Funk, Quentin wrote:

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Hey all-

Freesurfer's recon-all fails if I try to give it a dicom from the new Siemens Enhanced format. Are there any workarounds that don't involve converting to nifti with a different software first?

Thanks!

Quentin Funk, PhD Houston Methodist Research Institute 713-363-9003 tel:713-363-9003

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