Hi Ziqian

it really depends on the specifics of the tumor. If it is interior to the white matter and you have a mask you could try pasting that into the wm.mgz as "edited" wm (that is, set those wm.mgz voxels to 255)

cheers Bruce

On Mon, 23 Jul 2018, 王子谦 wrote:

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Hi,

I am trying to do connectome to my patient with glioma. But now I’m stuck in parcellation the T1 image.

Because the chaotic intensities of tumor totally mess up the outcome.

Do you guys have any suggestion to the tumor? Is it any command about mask the tumor or any other method?

Any suggestion would be thankful!

Best

Ziqian