Could you please help me with my problem? I have a Nifti image with segmented white matter hyperintensity and a wparc image made at freesurfer. I want to know how I can know the names of the Nifti image areas, using a wparc as a location map.
So, the problem is: identify all areas.
I wanted an automatic process that would carry out this evaluation generating volumetric data and the names of the regions of intersection between these two images.
HI Cleudiana
the value of the voxels in the nifti image should be indices that you can use to lookup names in
$FREESURFER_HOME/FreeSurferColorLUT.txt
is that what you want?
cheers Bruce On Wed, 8 Nov 2017, Cleudiana Lima wrote:
Could you please help me with my problem? I have a Nifti image with segmented white matter hyperintensity and a wparc image made at freesurfer. I want to know how I can know the names of the Nifti image areas, using a wparc as a location map.
So, the problem is: identify all areas.
I wanted an automatic process that would carry out this evaluation generating volumetric data and the names of the regions of intersection between these two images.
-- Cleudiana Lima
freesurfer@nmr.mgh.harvard.edu
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Bruce Fischl -
Cleudiana Lima