Bruce,
I've been getting values from around 188-255 in the wm.
-Derin
can you send us the image? This sounds like a bug. You should be able to specify the intensity scaling directly in mri_convert using -sc <scale factor> On Fri, 13 Oct 2006, Derin Cobia wrote:
Bruce,
I've been getting values from around 188-255 in the wm.
-Derin
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Here is the orig.mgz file. Been having trouble with attachments lately, hopefully this works. Thanks.
-Derin
can you send us the image? This sounds like a bug. You should be able to specify the intensity scaling directly in mri_convert using -sc <scale factor> On Fri, 13 Oct 2006, Derin Cobia wrote:
Bruce,
I've been getting values from around 188-255 in the wm.
-Derin
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Hi Derin,
the attachment came through fine, but I need the unconformed (e.g. 001.mgz) volume in order to diagnose what went wrong.
Bruce On Fri, 13 Oct 2006, Derin Cobia wrote:
Here is the orig.mgz file. Been having trouble with attachments lately, hopefully this works. Thanks.
-Derin
can you send us the image? This sounds like a bug. You should be able to specify the intensity scaling directly in mri_convert using -sc <scale factor> On Fri, 13 Oct 2006, Derin Cobia wrote:
Bruce,
I've been getting values from around 188-255 in the wm.
-Derin
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Oops, sorry, here you are. I do have another question. I've attached a snapshot of a lh pial w/lh.aparc.a2005s.stats overlaid. Does this look right? It doesn't appear evenly parcillated (some color overlaying other gyri, etc). I want to examine middle frontal gyrus volume/thickness in my subjects, but looking at this I don't know if they were processed correctly. Thanks.
-Derin
Hi Derin,
the attachment came through fine, but I need the unconformed (e.g. 001.mgz) volume in order to diagnose what went wrong.
Bruce On Fri, 13 Oct 2006, Derin Cobia wrote:
Here is the orig.mgz file. Been having trouble with attachments lately, hopefully this works. Thanks.
-Derin
can you send us the image? This sounds like a bug. You should be able to specify the intensity scaling directly in mri_convert using -sc <scale factor> On Fri, 13 Oct 2006, Derin Cobia wrote:
Bruce,
I've been getting values from around 188-255 in the wm.
-Derin
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
I believe I discovered the problem. I had accidently linked to the 8-bit .img files for the subjects instead of the 16-bit ones. I've rerun autorecon1 and everything looks good.
Any thoughts on the parcellated pial shot I sent? It doesn't look correct to me, but maybe I'm wrong. Thanks!
-Derin
Hi Derin,
the attachment came through fine, but I need the unconformed (e.g. 001.mgz) volume in order to diagnose what went wrong.
Bruce On Fri, 13 Oct 2006, Derin Cobia wrote:
Here is the orig.mgz file. Been having trouble with attachments lately, hopefully this works. Thanks.
-Derin
can you send us the image? This sounds like a bug. You should be able to specify the intensity scaling directly in mri_convert using -sc <scale factor> On Fri, 13 Oct 2006, Derin Cobia wrote:
Bruce,
I've been getting values from around 188-255 in the wm.
-Derin
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
nope, I didn't look at them. Can you resend?
On Fri, 13 Oct 2006, Derin Cobia wrote:
I believe I discovered the problem. I had accidently linked to the 8-bit .img files for the subjects instead of the 16-bit ones. I've rerun autorecon1 and everything looks good.
Any thoughts on the parcellated pial shot I sent? It doesn't look correct to me, but maybe I'm wrong. Thanks!
-Derin
Hi Derin,
the attachment came through fine, but I need the unconformed (e.g. 001.mgz) volume in order to diagnose what went wrong.
Bruce On Fri, 13 Oct 2006, Derin Cobia wrote:
Here is the orig.mgz file. Been having trouble with attachments lately, hopefully this works. Thanks.
-Derin
can you send us the image? This sounds like a bug. You should be able to specify the intensity scaling directly in mri_convert using -sc <scale factor> On Fri, 13 Oct 2006, Derin Cobia wrote:
Bruce,
I've been getting values from around 188-255 in the wm.
-Derin
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
freesurfer@nmr.mgh.harvard.edu
-
Bruce Fischl -
Derin Cobia