Greetings,
Is there any way to display just a subset of cortical labels onto one of the Freesurfer template brains (e.g., cvs_avg35) rather than all that are listed in lh.aparc.annot? I'm interested in loading frontal pole, superior frontal, superior parietal, etc onto a standard Freesurfer brain. My first thought was to create a new lh.aparc.annot file; however, I am having trouble editing it. Any thoughts?
Thanks, Nate
You could use mri_annotation2label
Then just load only the labels you care about.
HTH D
On Wed, Jun 11, 2014 at 3:11 PM, nmw njmedeir@illinois.edu wrote:
Greetings,
Is there any way to display just a subset of cortical labels onto one of the Freesurfer template brains (e.g., cvs_avg35) rather than all that are listed in lh.aparc.annot? I'm interested in loading frontal pole, superior frontal, superior parietal, etc onto a standard Freesurfer brain. My first thought was to create a new lh.aparc.annot file; however, I am having trouble editing it. Any thoughts?
Thanks, Nate
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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You can also recombine the labels into an annotation with mris_label2annot doug
On 6/11/14 9:15 PM, dgw wrote:
You could use mri_annotation2label
Then just load only the labels you care about.
HTH D
On Wed, Jun 11, 2014 at 3:11 PM, nmw <njmedeir@illinois.edu mailto:njmedeir@illinois.edu> wrote:
Greetings, Is there any way to display just a subset of cortical labels onto one of the Freesurfer template brains (e.g., cvs_avg35) rather than all that are listed in lh.aparc.annot? I'm interested in loading frontal pole, superior frontal, superior parietal, etc onto a standard Freesurfer brain. My first thought was to create a new lh.aparc.annot file; however, I am having trouble editing it. Any thoughts? Thanks, Nate _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
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Hi Nate
you can use mri_annotation2label to create separate label files, then load whetever you want.
cheers Bruce
On Wed, 11 Jun 2014, nmw wrote:
Greetings,
Is there any way to display just a subset of cortical labels onto one of the Freesurfer template brains (e.g., cvs_avg35) rather than all that are listed in lh.aparc.annot? I'm interested in loading frontal pole, superior frontal, superior parietal, etc onto a standard Freesurfer brain. My first thought was to create a new lh.aparc.annot file; however, I am having trouble editing it. Any thoughts?
Thanks, Nate
freesurfer@nmr.mgh.harvard.edu
-
Bruce Fischl -
dgw -
Douglas Greve -
nmw