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Hello Freesurfer devs,
Is there available any Desikian-Killiany and Destrieux atlas template or image downloadable with all brain labels of the atlas? I would to use this image to show my results in a lab meeting? I would need somethig similar that the lookup table used in the freeview.
Cheers,
Hi Miguel
I think we distribute parcellations of the fsaverage subject (and of bert and ernie), so if you have any of those you can use them to show the atlas labels. The atlases themselves are more complicated and store other information that isn't easily visualizable
cheers Bruce On Wed, 7 Nov 2018, Miguel Ángel Rivas Fernández wrote:
External Email - Use Caution
Hello Freesurfer devs,
Is there available any Desikian-Killiany and Destrieux atlas template or image downloadable with all brain labels of the atlas? I would to use this image to show my results in a lab meeting? I would need somethig similar that the lookup table used in the freeview.
Cheers,
-- Miguel Ángel Rivas Fernández
I'm not sure what you mean. The atlas is distributed with FS.
On 11/07/2018 05:09 PM, Miguel Ángel Rivas Fernández wrote:
External Email - Use Caution
Hello Freesurfer devs,
Is there available any Desikian-Killiany and Destrieux atlas template or image downloadable with all brain labels of the atlas? I would to use this image to show my results in a lab meeting? I would need somethig similar that the lookup table used in the freeview.
Cheers,
-- *Miguel Ángel Rivas Fernández*
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
External Email - Use Caution
Sorry for my unclear question. I only need a brain image that contains the labels of each of the Desikian-Killiany and also Destrieux atlas. This image would allow me to point out to my colleagues the regions where I obtained significant differences between the control group and the experimental group.
It would be something similar to the image I send in attached
Thanks in advance,
Best,
[image: desikanKillianyAtlasKey.jpg]
El mié., 7 nov. 2018 a las 23:23, Greve, Douglas N.,Ph.D. (< DGREVE@mgh.harvard.edu>) escribió:
I'm not sure what you mean. The atlas is distributed with FS.
On 11/07/2018 05:09 PM, Miguel Ángel Rivas Fernández wrote:
External Email - Use CautionHello Freesurfer devs,
Is there available any Desikian-Killiany and Destrieux atlas template or image downloadable with all brain labels of the atlas? I would to use this image to show my results in a lab meeting? I would need somethig similar that the lookup table used in the freeview.
Cheers,
-- *Miguel Ángel Rivas Fernández*
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Why not just use that image?
On 11/7/18 6:47 PM, Miguel Ángel Rivas Fernández wrote:
External Email - Use Caution
Sorry for my unclear question. I only need a brain image that contains the labels of each of the Desikian-Killiany and also Destrieux atlas. This image would allow me to point out to my colleagues the regions where I obtained significant differences between the control group and the experimental group.
It would be something similar to the image I send in attached
Thanks in advance,
Best,
[desikanKillianyAtlasKey.jpg]
El mié., 7 nov. 2018 a las 23:23, Greve, Douglas N.,Ph.D. (<DGREVE@mgh.harvard.edumailto:DGREVE@mgh.harvard.edu>) escribió: I'm not sure what you mean. The atlas is distributed with FS.
On 11/07/2018 05:09 PM, Miguel Ángel Rivas Fernández wrote:
External Email - Use CautionHello Freesurfer devs,
Is there available any Desikian-Killiany and Destrieux atlas template or image downloadable with all brain labels of the atlas? I would to use this image to show my results in a lab meeting? I would need somethig similar that the lookup table used in the freeview.
Cheers,
-- *Miguel Ángel Rivas Fernández*
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edumailto:Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edumailto:Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
-- Miguel Ángel Rivas Fernández
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edumailto:Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
I use the attached legends for FS DK atlas labels.
Cheers,
g
On 08/11/2018 00:47, Miguel Ángel Rivas Fernández wrote:
External Email - Use Caution
Sorry for my unclear question. I only need a brain image that contains the labels of each of the Desikian-Killiany and also Destrieux atlas. This image would allow me to point out to my colleagues the regions where I obtained significant differences between the control group and the experimental group.
It would be something similar to the image I send in attached
Thanks in advance,
Best,
desikanKillianyAtlasKey.jpg
El mié., 7 nov. 2018 a las 23:23, Greve, Douglas N.,Ph.D. (<DGREVE@mgh.harvard.edu mailto:DGREVE@mgh.harvard.edu>) escribió:
I'm not sure what you mean. The atlas is distributed with FS. On 11/07/2018 05:09 PM, Miguel Ángel Rivas Fernández wrote: > > External Email - Use Caution > > > Hello Freesurfer devs, > > > Is there available any Desikian-Killiany and Destrieux atlas template > or image downloadable with all brain labels of the atlas? I would to > use this image to show my results in a lab meeting? I would need > somethig similar that the lookup table used in the freeview. > > > Cheers, > > -- > *Miguel Ángel Rivas Fernández* > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer-- *Miguel Ángel Rivas Fernández*
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
External Email - Use Caution
Thank you very much Giuseppe, it's costing me more to find an image similar to the one you send me but with the Destrieux atlas labels. In any case thank you very much for your help, it is what I was looking for.
Cheers,
El jue., 8 nov. 2018 a las 18:30, Giuseppe Cabras (giuseppe.cabras@uniud.it) escribió:
I use the attached legends for FS DK atlas labels.
Cheers,
g
On 08/11/2018 00:47, Miguel Ángel Rivas Fernández wrote:
External Email - Use CautionSorry for my unclear question. I only need a brain image that contains the labels of each of the Desikian-Killiany and also Destrieux atlas. This image would allow me to point out to my colleagues the regions where I obtained significant differences between the control group and the experimental group.
It would be something similar to the image I send in attached
Thanks in advance,
Best,
[image: desikanKillianyAtlasKey.jpg]
El mié., 7 nov. 2018 a las 23:23, Greve, Douglas N.,Ph.D. (< DGREVE@mgh.harvard.edu>) escribió:
I'm not sure what you mean. The atlas is distributed with FS.
On 11/07/2018 05:09 PM, Miguel Ángel Rivas Fernández wrote:
External Email - Use CautionHello Freesurfer devs,
Is there available any Desikian-Killiany and Destrieux atlas template or image downloadable with all brain labels of the atlas? I would to use this image to show my results in a lab meeting? I would need somethig similar that the lookup table used in the freeview.
Cheers,
-- *Miguel Ángel Rivas Fernández*
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
-- *Miguel Ángel Rivas Fernández*
Freesurfer mailing listFreesurfer@nmr.mgh.harvard.eduhttps://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
-- Giuseppe Cabras, PhD - Department of Mathematics, Computer Science and Physics InterUniversity Center for Behavioral Neurosciences University of Udine - via delle Scienze, 206 - 33100 UDINE Phone: +39-043255-8212 - Skype: giuseppe.cabras61 URL: http://people.uniud.it/page/giuseppe.cabras BOOK:http://www.amazon.com/Advanced-component-analysis-techniques-decomposition/d...
Sunt namque qui scire volunt eo fine tantum, ut sciant; et turpis curiositas est. Et sunt qui scire volunt, ut sciantur ipsi; et turpis vanitas est. [...] Et sunt item qui scire volunt ut scientiam suam vendant; verbi causa, pro pecunia, pro honoribus: et turpis quaestus est. Sed sunt quoque qui scire volunt, ut aedificent; et charitas est. Et item qui scire volunt, ut aedificentur: et prudentia est. Horum omnium soli ultimi duo non inveniuntur in abusione scientiae, quippe qui ad hoc volunt intelligere ut bene faciant. Denique: Intellectus bonus omnibus facientibus eum. Reliqui omnes audiant: Scienti bonum et non facienti, peccatum est ei. (Bernardus Claraevallensis, XII S.: Sermones super Cantica Canticorum, Sermo XXXVI, III)
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For Destrieux atlas labels I think you may use Fig.1 and Tab.1 of the paper:
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2937159/
cheers,
giuseppe
On 08/11/2018 19:25, Miguel Ángel Rivas Fernández wrote:
External Email - Use Caution
Thank you very much Giuseppe, it's costing me more to find an image similar to the one you send me but with the Destrieux atlas labels. In any case thank you very much for your help, it is what I was looking for.
Cheers,
El jue., 8 nov. 2018 a las 18:30, Giuseppe Cabras (<giuseppe.cabras@uniud.it mailto:giuseppe.cabras@uniud.it>) escribió:
I use the attached legends for FS DK atlas labels. Cheers, g On 08/11/2018 00:47, Miguel Ángel Rivas Fernández wrote:External Email - Use Caution Sorry for my unclear question. I only need a brain image that contains the labels of each of the Desikian-Killiany and also Destrieux atlas. This image would allow me to point out to my colleagues the regions where I obtained significant differences between the control group and the experimental group. It would be something similar to the image I send in attached Thanks in advance, Best, desikanKillianyAtlasKey.jpg El mié., 7 nov. 2018 a las 23:23, Greve, Douglas N.,Ph.D. (<DGREVE@mgh.harvard.edu <mailto:DGREVE@mgh.harvard.edu>>) escribió: I'm not sure what you mean. The atlas is distributed with FS. On 11/07/2018 05:09 PM, Miguel Ángel Rivas Fernández wrote: > > External Email - Use Caution > > > Hello Freesurfer devs, > > > Is there available any Desikian-Killiany and Destrieux atlas template > or image downloadable with all brain labels of the atlas? I would to > use this image to show my results in a lab meeting? I would need > somethig similar that the lookup table used in the freeview. > > > Cheers, > > -- > *Miguel Ángel Rivas Fernández* > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- *Miguel Ángel Rivas Fernández* _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer-- Giuseppe Cabras, PhD - Department of Mathematics, Computer Science and Physics InterUniversity Center for Behavioral Neurosciences University of Udine - via delle Scienze, 206 - 33100 UDINE Phone: +39-043255-8212 - Skype: giuseppe.cabras61 URL:http://people.uniud.it/page/giuseppe.cabras BOOK:http://www.amazon.com/Advanced-component-analysis-techniques-decomposition/dp/3639873149 ********************************************************************************************* Sunt namque qui scire volunt eo fine tantum, ut sciant; et turpis curiositas est. Et sunt qui scire volunt, ut sciantur ipsi; et turpis vanitas est. [...] Et sunt item qui scire volunt ut scientiam suam vendant; verbi causa, pro pecunia, pro honoribus: et turpis quaestus est. Sed sunt quoque qui scire volunt, ut aedificent; et charitas est. Et item qui scire volunt, ut aedificentur: et prudentia est. Horum omnium soli ultimi duo non inveniuntur in abusione scientiae, quippe qui ad hoc volunt intelligere ut bene faciant. Denique: Intellectus bonus omnibus facientibus eum. Reliqui omnes audiant: Scienti bonum et non facienti, peccatum est ei. (Bernardus Claraevallensis, XII S.: Sermones super Cantica Canticorum, Sermo XXXVI, III) External Email - Use Caution _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer-- *Miguel Ángel Rivas Fernández*
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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Bruce Fischl -
Giuseppe Cabras -
Greve, Douglas N.,Ph.D. -
Miguel Ángel Rivas Fernández