I think recon-all -subjid <subject> -segstats

should do itOn Wed, 30 Jan 2008, Jared Conley wrote:

FreeSurfer Community,

Is there an easy, quick way to regenerate the aseg.stats file? This particular file was deleted accidentally for a few subjects and we wondered if we could quickly recreate this file without having to run recon-all again. All the other files in the subject directory are present.

Thanks in advance,

Jared _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

Jared, You can do recon-all -segstats <subjid> for each subject. This uses the aseg.mgz to create the aseg.stats, however, if the new aseg.mgz you generated with the script I sent you is named something other than aseg.mgz, then you will want to change it to aseg.mgz for this to work. Allison

On Wed, 30 Jan 2008, Jared Conley wrote:

FreeSurfer Community,

Is there an easy, quick way to regenerate the aseg.stats file? This particular file was deleted accidentally for a few subjects and we wondered if we could quickly recreate this file without having to run recon-all again. All the other files in the subject directory are present.

Thanks in advance,

Jared _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer