FYI..

Begin forwarded message:

From: iacono@nmr.mgh.harvard.edu Date: May 13, 2010 3:11:09 PM EDT To: "Krish Subramaniam" krish@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] problems with tksurfer

Thanks Krish! you solved my problem. I mean, I made just a small error in typing the SUBJECT_DIR and with ls $SUBECTS_DIR I realized it! Sorry for the trivial question and thanks for your help! Maria

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Hi Maria

The SUBJECTS_DIR is one directory above the my_subj_name. Sorry if this is a trivial point, but worth a check.

can you give me the output of following commands

echo $SUBJECTS_DIR ls $SUBJECTS_DIR

On May 12, 2010, at 7:03 PM, iacono@nmr.mgh.harvard.edu wrote:

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Hi all! I have some problems to visualize surfaces by tksurfer. When I try to load a surface with the command tksurfer my_subj_name lh inflated I receive the following error: ERROR: could not read header info from T1 or orig in homes/..../my_subj_name/mri The SUBJECTS_DIR is the correct one and in my mri folder there are both T1.mgz and orig.mgz. Any suggestion? Could the headers of those files be corrupted? How can I check it? Thanks in advance for any help! Maria

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