Hi Kelly,

sorry, I meant to answer. mri_extract_label will make a binary ROI out of the aparc+aseg which you can use as an ROI. The indices for the different structures are in $FREESURFER_HOME/FreeSurferColorLUT.txt

cheers, Bruce

On Fri, 29 May 2009, Kelly Silva wrote:

Hi, Freesurfers       I need to know how can I generate a label or ROI of one subcortical structure.                                           Thanks,                                                 Kelly

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