Hi Bruce, So for the following command: bbregister --s bert --mov func.nii --init-fsl --reg register.dat tkregister2 --mov func.nii --reg register.dat --surf

In the case of a retinotopy analysis, which files are register.dat and func.nii?

Quoting Bruce Fischl fischl@nmr.mgh.harvard.edu:

Hi Michelle Try using bbregister.

Cheers Bruce

On Jul 31, 2011, at 6:54 PM, Michelle Umali muu1@columbia.edu wrote:

...

Dear Freesurfers, During my retinotopy analysis, I was getting very strange fieldsign data (blue and red speckles) and my polar and eccentricity data was limited to the occipital pole. It was suggested that I check registration between the functional and anatomical.

I was looking up tkregister2 help to figure this out but am still unsure how to register the polar and eccentricity data to the anatomical.

Any help would be most appreciated.

-Michelle Umali _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

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