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Dear FreeSurfer list,
I'm wondering if there is any way to input different starting segmentations for the hippocampus into the hippocampal subfield segmentation? We've got a hippocampus specific segmentation algorithm which we'd like to try as input to see if it provides a better starting point than whole brain labels. Are there any other inputs we'd need?
Best wishes,
Ian Malone
freesurfer@nmr.mgh.harvard.edu