Hi Freesurfers,
I have seen at least three ways for identifying an intermediate surface between the white and pial surfaces:
- Multiply the surface normal vector for each white surface vertex by half of the cortical thickness and add it to each vertex coordinate - Average the white and pial coordinates for each vertex - Use mris_expand, e.g. `mris_expand -thickness lh.smoothwm 0.5 lh.graymid`
I have found that these approaches all give similar, but not identical results.
Is there a consensus that one approach is best relative to the others?
Thanks, Michael
Hi Michael
I think the 3rd is the best. It's guaranteed to not self-intersect and be smooth, which the other two methods are not
cheers Bruce On Wed, 11 May 2016, Michael Waskom wrote:
Hi Freesurfers, I have seen at least three ways for identifying an intermediate surface between the white and pial surfaces:
- Multiply the surface normal vector for each white surface vertex by half
of the cortical thickness and add it to each vertex coordinate
- Average the white and pial coordinates for each vertex
- Use mris_expand, e.g. `mris_expand -thickness lh.smoothwm 0.5 lh.graymid`
I have found that these approaches all give similar, but not identical results.
Is there a consensus that one approach is best relative to the others?
Thanks, Michael
freesurfer@nmr.mgh.harvard.edu