Hi Rachel

hmmm, what does the wm.mgz look like there? And the orig? If the wm.mgz includes those voxels but the orig does not it is likely a topological defect that was fixed incorrectly. If you can't find it, you can upload the subject and we can take a look

cheers Bruce

On Sat, 23 Feb 2019, Rachel Hoel wrote:

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Dear Freesurfer Developers,

Our study is using the longitudinal processing pipeline with version 6.0. We have one subject (screenshots included) where there is a hyperintenisty in the right temporal lobe, and even after adding several control points and running recon-all, the white matter is still not fully being included in the surface.

For this particular subject, we are performing both white and grey matter edits starting at the cross-sectional. The screenshots included are that of the cross-sectional.

Are there any other types of edits we can make to try and include this region in the white matter segmentation?

All the best,

Rachel