Dear freesurfer gurus, I noticed something unusual in some of our data today. When the command mri_info was run on some of the orig.mgz volumes the values listed for echo time and flip angle in some of the scans were 0.00, even though there was a listing for repetition time. What could have caused this? Could misinformation in the header cause variation in the freesurfer processing of that scan? Cheers, Jared
It was likely converted thru an intermediate format that did not retain those values (eg, nifti or analyze) before being imported into freesurfer.
Jared Price wrote:
Dear freesurfer gurus, I noticed something unusual in some of our data today. When the command mri_info was run on some of the orig.mgz volumes the values listed for echo time and flip angle in some of the scans were 0.00, even though there was a listing for repetition time. What could have caused this? Could misinformation in the header cause variation in the freesurfer processing of that scan? Cheers, Jared _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Hi Jared,
if you converted it from a format that doesn't store this info (e.g. analyze). It won't change anything in the standard stream though Bruce
On Thu, 4 Dec 2008, Jared Price wrote:
Dear freesurfer gurus, I noticed something unusual in some of our data today. When the command mri_info was run on some of the orig.mgz volumes the values listed for echo time and flip angle in some of the scans were 0.00, even though there was a listing for repetition time. What could have caused this? Could misinformation in the header cause variation in the freesurfer processing of that scan? Cheers, Jared _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
freesurfer@nmr.mgh.harvard.edu
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Bruce Fischl -
Doug Greve -
Jared Price