Dear Freesurfer experts, Based on the FS wiki, I calculated the cortical thickness difference between the lh and rh of a subject.Now, I want to use the “mris_apply_reg” command to map the “left-right difference” from fsaverage_sym back to the subject's native surface.Unfortunately, I did not find the appropriate options of this command to do this work.Thanks for any help. Best regards,Ali-Reza Ali-Reza Mohammadi-Nejad Pre-doctoral research fellow Radiology and Neurology Research Henry Ford Health System Detroit, MI 48202, USA
It would be something like mris_apply_reg --src lh.data-from-fsavgsym.mgh --streg $SUBJECTS_DIR/fsaverage_sym/surf/lh.sphere.reg $SUBJECTS_DIR/yoursubject/surf/lh.fsaverage_sym.sphere.reg --o lh.data-from-fsavgsym-on-yoursubject.mgh
On 07/04/2016 10:34 AM, Ali-Reza Mohammadi-Nejad wrote:
Dear Freesurfer experts,
Based on the FS wiki, I calculated the cortical thickness difference between the lh and rh of a subject. Now, I want to use the “mris_apply_reg” command to map the “left-right difference” from fsaverage_sym back to the subject's native surface. Unfortunately, I did not find the appropriate options of this command to do this work. Thanks for any help. Best regards, Ali-Reza Ali-Reza Mohammadi-Nejad Pre-doctoral research fellow Radiology and Neurology Research Henry Ford Health System Detroit, MI 48202, USA
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Dear Freesurfer experts,
Based on the FS wiki, I calculated the cortical thickness difference between the lh and rh of a subject. Now, I want to use the “mris_apply_reg” command to map the “left-right difference” from fsaverage_sym back to the subject's native surface. Unfortunately, I did not find the appropriate options of this command to do this work. Thanks for any help.
Best regards, Ali-Reza
Ali-Reza Mohammadi-Nejad Pre-doctoral research fellow Radiology and Neurology Research Henry Ford Health System Detroit, MI 48202, USA
I answered this yesterday
On 07/06/2016 01:47 PM, Douglas N Greve wrote:
It would be something like mris_apply_reg --src lh.data-from-fsavgsym.mgh --streg $SUBJECTS_DIR/fsaverage_sym/surf/lh.sphere.reg $SUBJECTS_DIR/yoursubject/surf/lh.fsaverage_sym.sphere.reg --o lh.data-from-fsavgsym-on-yoursubject.mgh
On 07/04/2016 10:34 AM, Ali-Reza Mohammadi-Nejad wrote:
Dear Freesurfer experts,
Based on the FS wiki, I calculated the cortical thickness difference between the lh and rh of a subject. Now, I want to use the “mris_apply_reg” command to map the “left-right difference” from fsaverage_sym back to the subject's native surface. Unfortunately, I did not find the appropriate options of this command to do this work. Thanks for any help. Best regards,
On 07/07/2016 01:05 PM, ali reza mohammadi nejad wrote:
Dear Freesurfer experts,
Based on the FS wiki, I calculated the cortical thickness difference between the lh and rh of a subject. Now, I want to use the “mris_apply_reg” command to map the “left-right difference” from fsaverage_sym back to the subject's native surface. Unfortunately, I did not find the appropriate options of this command to do this work. Thanks for any help. Best regards, Ali-Reza Ali-Reza Mohammadi-Nejad Pre-doctoral research fellow Radiology and Neurology Research Henry Ford Health System Detroit, MI 48202, USA
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
freesurfer@nmr.mgh.harvard.edu
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Ali-Reza Mohammadi-Nejad
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Douglas N Greve