Yes, use reg-feat2anat to create the registration, then use aseg2feat. There are tutorials for this on our wiki. doug

Michelle Umali wrote:

Dear Freesurfers, Is there a way to generate automatically generate an amygdala mask from recon-all results to fead into an FSL feat analysis?

Thanks. Michelle _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer