External Email - Use Caution
Hello,
I did a correlation analysis and see the significant areas in freeview when I run
freeview -f $SUBJECTS_DIR/fsaverage/surf/lh.inflated:overlay=cache.th20.abs.sig.cluster.mgh
However, I would like to see whether the significant areas are a part of the Yeo 2011 7 Networks.
https://secure-web.cisco.com/1rw_v7ySWe7KBTv8MIybez7KI7Zn2aGlwvG8tPfwhThugkL...
Is there a way to overlay the Yeo network area in Freeview?
Or some other way to see if the significant areas are a part of the network and visualize it?
Thank you,
Haley
You can load them as annotations in freeview along with your overlay. Change the z-order of the overlay to be larger than the annotation so that the overlay will be displayed on top of the annotation.
Ruopeng
On Aug 31, 2021, at 10:16 AM, Haley Park <hparkit@gmail.commailto:hparkit@gmail.com> wrote:
External Email - Use Caution
Hello,
I did a correlation analysis and see the significant areas in freeview when I run
freeview -f $SUBJECTS_DIR/fsaverage/surf/lh.inflated:overlay=cache.th20.abs.sig.cluster.mgh
However, I would like to see whether the significant areas are a part of the Yeo 2011 7 Networks. MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://surfer.nmr.mgh.harvard.edu/fswiki/CorticalParcellation_Yeo2011https://secure-web.cisco.com/1rw_v7ySWe7KBTv8MIybez7KI7Zn2aGlwvG8tPfwhThugkLO_S_KxwVPPf90Iu4j6mkHYReJEaoyet3HVNOT_fRjHfsdfpszjZucri-DPhqJgjxzImKDOio6d2w4ktLLkdLZUGKeTfspQGcLFRnP9F5shjQ6gzm8vJR7yLIh-69WIA__HUivaCfhV9Q_8BqvswedpAIuUQ74s-65RyIvFtwglb7AtVA-g3WUBQGC9sNmzinQJBm8RLonTsTHPeKMSdrCZ_zz69-p-fbsRmyNu5Q/https%3A%2F%2Fsurfer.nmr.mgh.harvard.edu%2Ffswiki%2FCorticalParcellation_Yeo2011
Is there a way to overlay the Yeo network area in Freeview? Or some other way to see if the significant areas are a part of the network and visualize it?
Thank you, Haley _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edumailto:Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
External Email - Use Caution
Thank you! When I tried that I get a series of error messages like this:
MRISreadAnnotationIntoArray: vertex index out of range: 1948771661 i=0003746D, in_array_size=163842
annot file: /Applications/freesurfer/7.1.1/subjects/fsaverage/label/lh.Yeo2011_7NetworksConfidence_N1000.mgz
MRISreadAnnotationIntoArray: vertex index out of range: 1882730804 i=37323337, in_array_size=163842
annot file: /Applications/freesurfer/7.1.1/subjects/fsaverage/label/lh.Yeo2011_7NetworksConfidence_N1000.mgz
MRISreadAnnotationIntoArray: vertex index out of range: 778921832 i=00DCFD05, in_array_size=163842
On Tue, Aug 31, 2021 at 11:14 AM Wang, Ruopeng RWANG4@mgh.harvard.edu wrote:
You can load them as annotations in freeview along with your overlay. Change the z-order of the overlay to be larger than the annotation so that the overlay will be displayed on top of the annotation.
Ruopeng
On Aug 31, 2021, at 10:16 AM, Haley Park hparkit@gmail.com wrote:
External Email - Use CautionHello,
I did a correlation analysis and see the significant areas in freeview when I run
freeview -f $SUBJECTS_DIR/fsaverage/surf/lh.inflated:overlay=cache.th20.abs.sig.cluster.mgh
However, I would like to see whether the significant areas are a part of the Yeo 2011 7 Networks. *MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* https://secure-web.cisco.com/1EB_-ZdpdUs4nJcIh8SKpnP6Wd1HJZXZUP2i766aG4SENN_... https://secure-web.cisco.com/1rw_v7ySWe7KBTv8MIybez7KI7Zn2aGlwvG8tPfwhThugkLO_S_KxwVPPf90Iu4j6mkHYReJEaoyet3HVNOT_fRjHfsdfpszjZucri-DPhqJgjxzImKDOio6d2w4ktLLkdLZUGKeTfspQGcLFRnP9F5shjQ6gzm8vJR7yLIh-69WIA__HUivaCfhV9Q_8BqvswedpAIuUQ74s-65RyIvFtwglb7AtVA-g3WUBQGC9sNmzinQJBm8RLonTsTHPeKMSdrCZ_zz69-p-fbsRmyNu5Q/https%3A%2F%2Fsurfer.nmr.mgh.harvard.edu%2Ffswiki%2FCorticalParcellation_Yeo2011
Is there a way to overlay the Yeo network area in Freeview? Or some other way to see if the significant areas are a part of the network and visualize it?
Thank you, Haley _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://secure-web.cisco.com/18XTmv_IjEaWYuie4fjwXSCD0WnEYjYW0_gI08hYjNWr_ad...
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://secure-web.cisco.com/18XTmv_IjEaWYuie4fjwXSCD0WnEYjYW0_gI08hYjNWr_ad... The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Mass General Brigham Compliance HelpLine at http://secure-web.cisco.com/13G9dFlLZnqLC1o36SxXiHRfa0KfaKIOiUCupQIi6H0yzWQm... . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail. Please note that this e-mail is not secure (encrypted). If you do not wish to continue communication over unencrypted e-mail, please notify the sender of this message immediately. Continuing to send or respond to e-mail after receiving this message means you understand and accept this risk and wish to continue to communicate over unencrypted e-mail.
That is not an annotation file. Try the one with .annot suffix.
Ruopeng
On Aug 31, 2021, at 12:07 PM, Haley Park <hparkit@gmail.commailto:hparkit@gmail.com> wrote:
External Email - Use Caution
Thank you! When I tried that I get a series of error messages like this:
MRISreadAnnotationIntoArray: vertex index out of range: 1948771661 i=0003746D, in_array_size=163842 annot file: /Applications/freesurfer/7.1.1/subjects/fsaverage/label/lh.Yeo2011_7NetworksConfidence_N1000.mgz MRISreadAnnotationIntoArray: vertex index out of range: 1882730804 i=37323337, in_array_size=163842 annot file: /Applications/freesurfer/7.1.1/subjects/fsaverage/label/lh.Yeo2011_7NetworksConfidence_N1000.mgz MRISreadAnnotationIntoArray: vertex index out of range: 778921832 i=00DCFD05, in_array_size=163842
On Tue, Aug 31, 2021 at 11:14 AM Wang, Ruopeng <RWANG4@mgh.harvard.edumailto:RWANG4@mgh.harvard.edu> wrote: You can load them as annotations in freeview along with your overlay. Change the z-order of the overlay to be larger than the annotation so that the overlay will be displayed on top of the annotation.
Ruopeng
On Aug 31, 2021, at 10:16 AM, Haley Park <hparkit@gmail.commailto:hparkit@gmail.com> wrote:
External Email - Use Caution
Hello,
I did a correlation analysis and see the significant areas in freeview when I run
freeview -f $SUBJECTS_DIR/fsaverage/surf/lh.inflated:overlay=cache.th20.abs.sig.cluster.mgh
However, I would like to see whether the significant areas are a part of the Yeo 2011 7 Networks. MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://surfer.nmr.mgh.harvard.edu/fswiki/CorticalParcellation_Yeo2011https://secure-web.cisco.com/1rw_v7ySWe7KBTv8MIybez7KI7Zn2aGlwvG8tPfwhThugkLO_S_KxwVPPf90Iu4j6mkHYReJEaoyet3HVNOT_fRjHfsdfpszjZucri-DPhqJgjxzImKDOio6d2w4ktLLkdLZUGKeTfspQGcLFRnP9F5shjQ6gzm8vJR7yLIh-69WIA__HUivaCfhV9Q_8BqvswedpAIuUQ74s-65RyIvFtwglb7AtVA-g3WUBQGC9sNmzinQJBm8RLonTsTHPeKMSdrCZ_zz69-p-fbsRmyNu5Q/https%3A%2F%2Fsurfer.nmr.mgh.harvard.edu%2Ffswiki%2FCorticalParcellation_Yeo2011
Is there a way to overlay the Yeo network area in Freeview? Or some other way to see if the significant areas are a part of the network and visualize it?
Thank you, Haley _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edumailto:Freesurfer@nmr.mgh.harvard.edu MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurferhttps://secure-web.cisco.com/1xMUlG4vI3Lq_dx8o09UbLowK8bxqcr28PEag-npYvFyFPD-n5iV95i87gZE_Ajjmo8Dxnsj2gMfNBtQIPpi-1eZlDFdvChyg5Xy3c55Rq9euKB4fFgECHj4PTKnk_1JJJSO-hCIs7ri5Knfsdmg_5vnXGqhsTHLj_0mhLKhHTBXERHohka0OvqZu1kQ259NxeZkJpAuLTNHNPUIPwM-GlveuoRfX0kBCmULNIvAIjw47CLdHY7nD23iEDHqYEV1K/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edumailto:Freesurfer@nmr.mgh.harvard.edu MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurferhttps://secure-web.cisco.com/1xMUlG4vI3Lq_dx8o09UbLowK8bxqcr28PEag-npYvFyFPD-n5iV95i87gZE_Ajjmo8Dxnsj2gMfNBtQIPpi-1eZlDFdvChyg5Xy3c55Rq9euKB4fFgECHj4PTKnk_1JJJSO-hCIs7ri5Knfsdmg_5vnXGqhsTHLj_0mhLKhHTBXERHohka0OvqZu1kQ259NxeZkJpAuLTNHNPUIPwM-GlveuoRfX0kBCmULNIvAIjw47CLdHY7nD23iEDHqYEV1K/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Mass General Brigham Compliance HelpLine at MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be http://www.massgeneralbrigham.org/compliancelinehttp://secure-web.cisco.com/13G9dFlLZnqLC1o36SxXiHRfa0KfaKIOiUCupQIi6H0yzWQmGcU_UBPlz8_WB46Dm3gxR8z73rMxLqvCd1Q5kZWSOB7LtOw2v9LpeGw2HEFvKaobecmlGMhTJiVLHD2R28lHFoVQMrr3tMzzPO9UbY0D2mCFTeopXIlBUV-4QoJLFNkLWBQZGplRkScpKTihsYHlizBMaoKDmYlohCs2w-zrDHGp5xnoF292i6IQQ-bzNxJdPnZPLXQfqpVOL4MpS/http%3A%2F%2Fwww.massgeneralbrigham.org%2Fcomplianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail. Please note that this e-mail is not secure (encrypted). If you do not wish to continue communication over unencrypted e-mail, please notify the sender of this message immediately. Continuing to send or respond to e-mail after receiving this message means you understand and accept this risk and wish to continue to communicate over unencrypted e-mail. _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edumailto:Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
freesurfer@nmr.mgh.harvard.edu
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Haley Park -
Wang, Ruopeng