You can run it with stc-sess (this is a frontend for FSL's slicetimer). You can pick the slice order with -so. If it's interleaved and from a siemens scanner, then just specify "siemens" as the slice order. Run it with -help for more info.

doug

On Mon, 31 Jul 2006 cameo@nmr.mgh.harvard.edu wrote:

Hi all, I was wondering if fs-fast implements slice time correction at any point during processing? if so does it default to correction for either interleaved or linear acquisition and can this be modified? Thanks, Cameron _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer