You can include a mask, eg mri_segstats --i input.nii.gz --mask input.nii.gz --maskthresh .00000001

On 6/10/16 11:59 AM, Lakhani, Bimal wrote:

Hello,

I am running mri_segstats to get the intensity mean of a custom image volume, but I do not want zeroes to be included in the calculation of the mean. Is there an option to remove zeroes from this calculation or another potential workaround?

Thanks very much! Bimal

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