Use mri_binarize with the --match option to create a mask of the regions you want. Then use mri_mask applied to aparc+aseg to create a new volume with only the regions you want doug

On 04/22/2014 09:06 AM, Courtney Haswell wrote:

Hi!

I want to view only certain segmented regions on one of our subject's brains. It seems like it should be simple but I am struggling to find the steps. I want to display only hippocampus, amygdala, medial orbitofrontal, lateral orbitofrontal, sulcus/gyri anterior cingulate, subcallosal gyrus, and rACC and cACC.

How do I extract these labels so that I can only show just these regions on the brain? I extracted stats for these areas, but want to visually show the locations.

Thank you, Courtney

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