You can run recon-all -s subject -vno-check or just vno_match_check $subjid $hemi

doug

On 09/11/2012 11:24 AM, Darren Gitelman wrote:

Hi

I was trying to create an average subject using the make_average_subject command.

When it got to one of the subjects there was the following error:

#@# processing subject 4/85 3106... Reading /home/drg/3106/surf/lh.sphere.reg mrisReadTriangleFile(/home/drg/3106/surf/lh.orig): surface doesn't match /home/drg/3106/surf/lh.sphere.reg

No such file or directory mrisReadTriangleFile failed.

No such file or directory MRISreadOriginalProperties: could not read surface file orig No such file or directory mris_make_average_surface: could not read orig file for lh.

No such file or directory mris_average_surface failed ERROR: make_average_surface

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Looking in the surf directory both lh.orig and lh.surf.reg exist, but I'm guessing this means I need to run the recon-all -s <subjid> -make all command.

My question is whether there is some command I can use to validate subjects before trying to run commands such as make_average_subject. I want to avoid the situation where I fix this subject, then try to rerun make_average_subject only to find that some other subject also needs fixing.

Thanks,

-- Darren Gitelman, MD Northwestern University 710 N. Lake Shore Dr. Abbott 11th Floor Chicago, IL 60611 Ph: (312) 908-8614 Fax: (312) 908-5073

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