Take a look at: http://surfer.nmr.mgh.harvard.edu/fswiki/UserContributions/Scripts

http://surfer.nmr.mgh.harvard.edu/fswiki/UserContributions/Scripts/ppaulo/qd...

PPJ

2008/8/13 Al-Radaideh Ali ppxama@nottingham.ac.uk

Hi Pedro,

I have seen in one email that using mri_surf2vol can map the thickness values into the volume but I am not sure what to type in the command line or what steps should I follow to do this. Sorry I am very new to freesurfer.

Thanks alot

Ali

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*From:* Pedro Paulo de Magalhães Oliveira Junior *Sent:* Wed 13/08/2008 14:23 *To:* 李日 *Cc:* freesurfer@nmr.mgh.harvard.edu *Subject:* Re: [Freesurfer] cortical thickness

Hi 李日,

1. Is the cortical thickness of the area where you passed the mouse over.
2. Is the index of the vertex in the cortical model.
3. Red line select the threshold limit for red color in the map, green line

select the interface between red/yellow coloring.

Regards,

Pedro Paulo Jr.

2008/8/13 李日 lirizkd@gmail.com

...

Hello, I am new to freesurfer, I used recon-all and it finished, I can get the thickness map,and i have some questions about the tksurfer tools. I paste a picture of the tksurfer tool window in the accessory,and i have labeled 3 areas. In area 1, I think is the thickness information, what does the number 3.274984 mean? In area 3, what is the funtion of the red and green line? Best Regards.

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Pedro Paulo de M. Oliveira Junior Diretor de Operações Netfilter & SpeedComm Telecom

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