Hi Doug and Bruce, I have run "recon-all -autorecon-pial -s my_subject" after editing the pial by tkmedit. I donot know wether "-autorecon-pial" option running the process stages 24-31. So I want to know wether I need run "-autorecon3" option as I run "-autorecon-pial" not "-autorecon2-pial" previously. Can I ensure 24-31 steps being done by running the "recon-all -autorecon3 -s my_subject". GM thickness group analysis should be done correctly. Thanks. All the best.

2013-12-12

Rujing Zha