External Email - Use Caution
Freesurfer experts,
I have a collection of older controls that I have reconstructed with FS 5.3. Due to age, many of these controls have hypointensities in the white matter that led to some errors in reconstruction that needed to be manually fixed.
Our new pipeline involves FS 6 (and soon 7, probably), and I'd like to be able to use this same group of controls aginst subjects who will be processed with newer versions of FS. Is there a way to do this that doesn't involve manually correcting the WM masks for each subject again?
My naive idea would be to copy over the (edited) wm.mgz files from the old reconstructions into the new reconstruction folders, then re-do the new reconstructions, but I wanted to make sure that wouldn't break anything / wasn't unwise for reasons that I am sure to be not seeing.
Thank you for any insight!
Quentin Funk, PhD Houston Methodist Academic Institute 713-363-9003tel:713-363-9003
Houston Methodist. Leading Medicine. U.S. News & World Report has named Houston Methodist Hospital the Best Hospital in Texas for 10 years in a row. Houston Methodist is the No. 1 hospital in Texas and No. 16 in the nation. For more than 100 years, Houston Methodist has provided the best — and safest — clinical care, advanced technology and patient experience. That is our promise of leading medicine. houstonmethodist.org twitter.com/MethodistHosp facebook.com/HoustonMethodist ***CONFIDENTIALITY NOTICE*** This e-mail is the property of Houston Methodist and/or its relevant affiliates and may contain restricted and privileged material for the sole use of the intended recipient(s). Any review, use, distribution or disclosure by others is strictly prohibited. If you are not the intended recipient (or authorized to receive for the recipient), please contact the sender and delete all copies of the message. Thank you.
You should just make a copy of your subject, then re-run with version 7x. It should automatically see the edits and incorporate them.
On 9/13/2021 3:40 PM, Funk, Quentin wrote:
External Email - Use Caution
Freesurfer experts,
I have a collection of older controls that I have reconstructed with FS 5.3. Due to age, many of these controls have hypointensities in the white matter that led to some errors in reconstruction that needed to be manually fixed.
Our new pipeline involves FS 6 (and soon 7, probably), and I'd like to be able to use this same group of controls aginst subjects who will be processed with newer versions of FS. Is there a way to do this that doesn't involve manually correcting the WM masks for each subject again?
My naive idea would be to copy over the (edited) wm.mgz files from the old reconstructions into the new reconstruction folders, then re-do the new reconstructions, but I wanted to make sure that wouldn't break anything / wasn't unwise for reasons that I am sure to be not seeing.
Thank you for any insight!
Quentin Funk, PhD Houston Methodist Academic Institute 713-363-9003 tel:713-363-9003
Houston Methodist. Leading Medicine.
/U.S. News & World Report/ has named Houston Methodist Hospital the Best Hospital in Texas for 10 years in a row. Houston Methodist is the No. 1 hospital in Texas and No. 16 in the nation. For more than 100 years, Houston Methodist has provided the best — and safest — clinical care, advanced technology and patient experience. That is our promise of leading medicine.
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Funk, Quentin