Dear FreeSurfer Experts,
I was trying to compile the FreeSurfer code by following steps shown in https://surfer.nmr.mgh.harvard.edu/fswiki/freesurfer_mac_developers_page
However, I got this error message after I ran ./configure
configure: error: FATAL: netcdf lib not found. Set LDFLAGS or --with-mni-dir.
I currently use OS X El Capitan as the OS.
How can I solve this problem? Thank you in advance.
Aziz.
what is your configure line? You may need to add something to point to the mni library
--with-mni-dir="/usr/pubsw/packages/mni/1.5"
On 08/14/2017 10:32 AM, Aziz Nanthaamornphong wrote:
Dear FreeSurfer Experts,
I was trying to compile the FreeSurfer code by following steps shown in https://surfer.nmr.mgh.harvard.edu/fswiki/freesurfer_mac_developers_page
However, I got this error message after I ran ./configure
configure: error: FATAL: netcdf lib not found. Set LDFLAGS or --with-mni-dir.
I currently use OS X El Capitan as the OS.
How can I solve this problem? Thank you in advance.
Aziz.
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
freesurfer@nmr.mgh.harvard.edu
-
Aziz Nanthaamornphong -
Douglas N Greve