Hi everyone,
I am trying to run the longitudinal stream on some images. I have 3 timepoints, and 2 of them finished the stream just fine, but a third quits during autorecon1 during the 3rd and final longitudinal step. There is no error message or anything, it just stops. The log file is attached--any insight into what is going wrong will be appreciated.
Thanks, Dana
What happens if you restart it? The log terminates in an odd place that I've never seen before.
Nick
On Wed, 2009-10-14 at 22:36 +0000, Dana W. Moore wrote:
Hi everyone,
I am trying to run the longitudinal stream on some images. I have 3 timepoints, and 2 of them finished the stream just fine, but a third quits during autorecon1 during the 3rd and final longitudinal step. There is no error message or anything, it just stops. The log file is attached--any insight into what is going wrong will be appreciated.
Thanks, Dana
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
When I try to redo it, it does the exact same thing. And the same thing is happening with a different subject as well.
At 06:43 PM 10/14/2009, Nick Schmansky wrote:
What happens if you restart it? The log terminates in an odd place that I've never seen before.
Nick
On Wed, 2009-10-14 at 22:36 +0000, Dana W. Moore wrote:
Hi everyone,
I am trying to run the longitudinal stream on some images. I have 3 timepoints, and 2 of them finished the stream just fine, but a third quits during autorecon1 during the 3rd and final longitudinal step. There is no error message or anything, it just stops. The log file is attached--any insight into what is going wrong will be appreciated.
Thanks, Dana
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Dana W. Moore, Ph.D. Neuropsychology Fellow Cornell Neuropsychology Service Weill Medical College of Cornell University New York Presbyterian Hospital Department of Neurology & Neuroscience 428 East 72nd Street, Suite 500 New York, NY 10021 Phone: 212-746-2823 Fax: 212-746-5584 Email: dwm2003@med.cornell.edu
Hi Dana,
never seen this either. Have you tried rerunning the longitudinal of that time point? Might be just a hickup. If it fails again at the same location, we probably need the data. I think the base-data and the cross sectional TP3 should be sufficient for us to replicate this.
Best, Martin
On Wed, 2009-10-14 at 22:36 +0000, Dana W. Moore wrote:
Hi everyone,
I am trying to run the longitudinal stream on some images. I have 3 timepoints, and 2 of them finished the stream just fine, but a third quits during autorecon1 during the 3rd and final longitudinal step. There is no error message or anything, it just stops. The log file is attached--any insight into what is going wrong will be appreciated.
Thanks, Dana
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
freesurfer@nmr.mgh.harvard.edu
-
Dana W. Moore -
Martin Reuter -
Nick Schmansky