I have run various batches of freesurfer on our MRI scans. Now I want to take many of the stats files from all of our subjects and export them to one giant excel document. I would like to have a separate sheet for each kind of statistic (i.e. Sheet1=LH aparc.2009a; Sheet2=RH aparc.2009a; Sheet3=LH DKT etc...) and then have all of the subjects for that statistic type be included in the appropriate, single sheet. Is there a program that you are aware of that I can use to export the stat files to excel? I would greatly appreciate any insight or help you can offer as it is taking me forever to do this by simply copy and paste. Thank you in advance,Zach
Hi Zach
check out asegstats2table and aparcstats2table and see if they do what you want
cheers Bruce On Thu, 14 Jul 2016, Zachariah Holub wrote:
I have run various batches of freesurfer on our MRI scans. Now I want to take many of the stats files from all of our subjects and export them to one giant excel document. I would like to have a separate sheet for each kind of statistic (i.e. Sheet1=LH aparc.2009a; Sheet2=RH aparc.2009a; Sheet3=LH DKT etc...) and then have all of the subjects for that statistic type be included in the appropriate, single sheet.
Is there a program that you are aware of that I can use to export the stat files to excel? I would greatly appreciate any insight or help you can offer as it is taking me forever to do this by simply copy and paste.
Thank you in advance, Zach
Awesome. Thanks for the quick reply. What program are those tables in?
Sent from my iPhone
On Jul 14, 2016, at 1:58 PM, Bruce Fischl fischl@nmr.mgh.harvard.edu wrote:
Hi Zach
check out asegstats2table and aparcstats2table and see if they do what you want
cheers Bruce
On Thu, 14 Jul 2016, Zachariah Holub wrote:
I have run various batches of freesurfer on our MRI scans. Now I want to take many of the stats files from all of our subjects and export them to one giant excel document. I would like to have a separate sheet for each kind of statistic (i.e. Sheet1=LH aparc.2009a; Sheet2=RH aparc.2009a; Sheet3=LH DKT etc...) and then have all of the subjects for that statistic type be included in the appropriate, single sheet. Is there a program that you are aware of that I can use to export the stat files to excel? I would greatly appreciate any insight or help you can offer as it is taking me forever to do this by simply copy and paste. Thank you in advance, Zach
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
they are commands included with FreeSurfer. try running the command with --help for usage information and examples
On Thu, 14 Jul 2016, Zach Holub wrote:
Awesome. Thanks for the quick reply. What program are those tables in?
Sent from my iPhone
On Jul 14, 2016, at 1:58 PM, Bruce Fischl fischl@nmr.mgh.harvard.edu wrote:
Hi Zach
check out asegstats2table and aparcstats2table and see if they do what you want
cheers Bruce
On Thu, 14 Jul 2016, Zachariah Holub wrote:
I have run various batches of freesurfer on our MRI scans. Now I want to take many of the stats files from all of our subjects and export them to one giant excel document. I would like to have a separate sheet for each kind of statistic (i.e. Sheet1=LH aparc.2009a; Sheet2=RH aparc.2009a; Sheet3=LH DKT etc...) and then have all of the subjects for that statistic type be included in the appropriate, single sheet. Is there a program that you are aware of that I can use to export the stat files to excel? I would greatly appreciate any insight or help you can offer as it is taking me forever to do this by simply copy and paste. Thank you in advance, Zach
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
freesurfer@nmr.mgh.harvard.edu
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Zach Holub -
Zachariah Holub