Hi,
I'm just wondering if there is something that needs to be selected using tkmedit to get electrode coordinates. I usually don't have this issue, but right now i'm unable to move my cursor to a new location.
Thanks so much, Mia
Make sure that the "Select Voxel Tool" is activated in the tool bar (or drop down tool menu). Sounds like you have the navigation button selected. doug
On 05/07/2012 02:05 PM, Borzello, Mia wrote:
Hi,
I'm just wondering if there is something that needs to be selected using tkmedit to get electrode coordinates. I usually don't have this issue, but right now i'm unable to move my cursor to a new location.
Thanks so much, Mia
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
"Select voxels" is actually highlighted already (and "Navigation" isn't), but it's still not working. Thanks, m ________________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edu [freesurfer-bounces@nmr.mgh.harvard.edu] on behalf of Douglas N Greve [greve@nmr.mgh.harvard.edu] Sent: Monday, May 07, 2012 2:43 PM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] inability to pick points
Make sure that the "Select Voxel Tool" is activated in the tool bar (or drop down tool menu). Sounds like you have the navigation button selected. doug
On 05/07/2012 02:05 PM, Borzello, Mia wrote:
Hi,
I'm just wondering if there is something that needs to be selected using tkmedit to get electrode coordinates. I usually don't have this issue, but right now i'm unable to move my cursor to a new location.
Thanks so much, Mia
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
is your input volume "conformed"? I think tkmedit disables some features if it is not On Mon, 7 May 2012, Borzello, Mia wrote:
"Select voxels" is actually highlighted already (and "Navigation" isn't), but it's still not working. Thanks, m ________________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edu [freesurfer-bounces@nmr.mgh.harvard.edu] on behalf of Douglas N Greve [greve@nmr.mgh.harvard.edu] Sent: Monday, May 07, 2012 2:43 PM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] inability to pick points
Make sure that the "Select Voxel Tool" is activated in the tool bar (or drop down tool menu). Sounds like you have the navigation button selected. doug
On 05/07/2012 02:05 PM, Borzello, Mia wrote:
Hi,
I'm just wondering if there is something that needs to be selected using tkmedit to get electrode coordinates. I usually don't have this issue, but right now i'm unable to move my cursor to a new location.
Thanks so much, Mia
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
I'm not sure what you mean by "conformed"? My input volume is that one that I coregistered if that's what you mean? ________________________________________ From: Bruce Fischl [fischl@nmr.mgh.harvard.edu] Sent: Monday, May 07, 2012 2:57 PM To: Borzello, Mia Cc: Douglas N Greve; freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] inability to pick points
is your input volume "conformed"? I think tkmedit disables some features if it is not On Mon, 7 May 2012, Borzello, Mia wrote:
"Select voxels" is actually highlighted already (and "Navigation" isn't), but it's still not working. Thanks, m ________________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edu [freesurfer-bounces@nmr.mgh.harvard.edu] on behalf of Douglas N Greve [greve@nmr.mgh.harvard.edu] Sent: Monday, May 07, 2012 2:43 PM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] inability to pick points
Make sure that the "Select Voxel Tool" is activated in the tool bar (or drop down tool menu). Sounds like you have the navigation button selected. doug
On 05/07/2012 02:05 PM, Borzello, Mia wrote:
Hi,
I'm just wondering if there is something that needs to be selected using tkmedit to get electrode coordinates. I usually don't have this issue, but right now i'm unable to move my cursor to a new location.
Thanks so much, Mia
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
conformed means 1mm isotropic. What is your tkmedit cmd line?
On 05/07/2012 03:04 PM, Borzello, Mia wrote:
I'm not sure what you mean by "conformed"? My input volume is that one that I coregistered if that's what you mean? ________________________________________ From: Bruce Fischl [fischl@nmr.mgh.harvard.edu] Sent: Monday, May 07, 2012 2:57 PM To: Borzello, Mia Cc: Douglas N Greve; freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] inability to pick points
is your input volume "conformed"? I think tkmedit disables some features if it is not On Mon, 7 May 2012, Borzello, Mia wrote:
"Select voxels" is actually highlighted already (and "Navigation" isn't), but it's still not working. Thanks, m ________________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edu [freesurfer-bounces@nmr.mgh.harvard.edu] on behalf of Douglas N Greve [greve@nmr.mgh.harvard.edu] Sent: Monday, May 07, 2012 2:43 PM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] inability to pick points
Make sure that the "Select Voxel Tool" is activated in the tool bar (or drop down tool menu). Sounds like you have the navigation button selected. doug
On 05/07/2012 02:05 PM, Borzello, Mia wrote:
Hi,
I'm just wondering if there is something that needs to be selected using tkmedit to get electrode coordinates. I usually don't have this issue, but right now i'm unable to move my cursor to a new location.
Thanks so much, Mia
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
tkmedit MGXX_SuferOutput_original norm.mgz lh.pial -aux ct.anat.mgz
I named the folder with the extra "_original" because this person already had a SurferOuput folder. Could that be the problem?
thanks. ________________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edu [freesurfer-bounces@nmr.mgh.harvard.edu] on behalf of Douglas N Greve [greve@nmr.mgh.harvard.edu] Sent: Monday, May 07, 2012 3:04 PM To: Borzello, Mia Cc: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] inability to pick points
conformed means 1mm isotropic. What is your tkmedit cmd line?
On 05/07/2012 03:04 PM, Borzello, Mia wrote:
I'm not sure what you mean by "conformed"? My input volume is that one that I coregistered if that's what you mean? ________________________________________ From: Bruce Fischl [fischl@nmr.mgh.harvard.edu] Sent: Monday, May 07, 2012 2:57 PM To: Borzello, Mia Cc: Douglas N Greve; freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] inability to pick points
is your input volume "conformed"? I think tkmedit disables some features if it is not On Mon, 7 May 2012, Borzello, Mia wrote:
"Select voxels" is actually highlighted already (and "Navigation" isn't), but it's still not working. Thanks, m ________________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edu [freesurfer-bounces@nmr.mgh.harvard.edu] on behalf of Douglas N Greve [greve@nmr.mgh.harvard.edu] Sent: Monday, May 07, 2012 2:43 PM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] inability to pick points
Make sure that the "Select Voxel Tool" is activated in the tool bar (or drop down tool menu). Sounds like you have the navigation button selected. doug
On 05/07/2012 02:05 PM, Borzello, Mia wrote:
Hi,
I'm just wondering if there is something that needs to be selected using tkmedit to get electrode coordinates. I usually don't have this issue, but right now i'm unable to move my cursor to a new location.
Thanks so much, Mia
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
is it 1mm isotropic, 256^3? Run mri_info on it
On Mon, 7 May 2012, Borzello, Mia wrote:
I'm not sure what you mean by "conformed"? My input volume is that one that I coregistered if that's what you mean? ________________________________________ From: Bruce Fischl [fischl@nmr.mgh.harvard.edu] Sent: Monday, May 07, 2012 2:57 PM To: Borzello, Mia Cc: Douglas N Greve; freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] inability to pick points
is your input volume "conformed"? I think tkmedit disables some features if it is not On Mon, 7 May 2012, Borzello, Mia wrote:
"Select voxels" is actually highlighted already (and "Navigation" isn't), but it's still not working. Thanks, m ________________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edu [freesurfer-bounces@nmr.mgh.harvard.edu] on behalf of Douglas N Greve [greve@nmr.mgh.harvard.edu] Sent: Monday, May 07, 2012 2:43 PM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] inability to pick points
Make sure that the "Select Voxel Tool" is activated in the tool bar (or drop down tool menu). Sounds like you have the navigation button selected. doug
On 05/07/2012 02:05 PM, Borzello, Mia wrote:
Hi,
I'm just wondering if there is something that needs to be selected using tkmedit to get electrode coordinates. I usually don't have this issue, but right now i'm unable to move my cursor to a new location.
Thanks so much, Mia
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
freesurfer@nmr.mgh.harvard.edu
-
Borzello, Mia -
Bruce Fischl -
Douglas N Greve