Can you replicate the error outside of dt_recon? If so, then you should make a  posting to the FSL group.

On 06/28/2018 02:03 AM, Куликова Софья Петровна wrote:

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Hello FreeSurfer Developers,

I was trying to run dt_recon (on centos7 system) but have got an error at the eddy_correct stage, saying there is no $FSLDIR/bin/imglob file. Indeed, it is not there. However, I gave installed FSL according to their tutorial without any errors and have no problem with running dt_recon on another machine. Could you kindly tell me how can I deal with this issue?

Best regards, Sofya Kulikova PhD Neuroscience, HSE-Perm

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