Jon,

The way to solve this problem is to use the "nohup" command, for example:

$nohup recon-all -s testsubject1 -all

-Zeke

On 07/18/2013 12:41 PM, Jonathan Holt wrote:

hey all,

I've had a few jobs that were recently terminated due to a broken ssh pipe, is there anything i should do to before re-running those same jobs in order to avoid any issues?

jon _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

you should be able to run

recon-all -s <subject> -sd <subjects_dir> -make all

On Thu, 18 Jul 2013, Jonathan Holt wrote:

hey all,

I've had a few jobs that were recently terminated due to a broken ssh pipe, is there anything i should do to before re-running those same jobs in order to avoid any issues?

jon _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer