Hi Doug,

I have successfully converted an individual BA label to a .label.gii file and opened it; I have not been able to open the Gifti .aparc.annot file after attempting to convert the .annot file in Connectome Workbench. So I am wondering if a full parcellation already exists in dlabel.gii format.

Thank you again,

Lauren

On Thu, Sep 6, 2018 at 12:32 PM, Douglas N. Greve dgreve@mgh.harvard.edu wrote:

what is the compatible format?

On 09/06/2018 11:54 AM, Dinicola, Lauren wrote:

...

Hi all,

I have been searching for the Freesurfer label or annot files for fsaverage in the formats compatible with Connectome Workbench and have not yet found them. Are these available? If not, is there a way to convert all the BA labels to then convert them to borders for viewing on fsaverage? I tried mris_convert -annot but was unsuccessful opening the output files.

Thank you very much for any help.

Lauren

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FYI: Connectome Workbench is comparable with NIFTI/GIFTI/CIFTI formats. GIFTI includes .surf.gii, .label.gii, .shape.gii, .func.gii.

Matt.

From: <freesurfer-bounces@nmr.mgh.harvard.edumailto:freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of "Dinicola, Lauren" <lmd600@g.harvard.edumailto:lmd600@g.harvard.edu> Reply-To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edumailto:freesurfer@nmr.mgh.harvard.edu> Date: Friday, September 7, 2018 at 3:40 AM To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edumailto:freesurfer@nmr.mgh.harvard.edu> Subject: Re: [Freesurfer] Parcellations (e.g., labels for Brodmann Areas) for Connectome Workbench?

Hi Doug,

I actually got this to work by just changing .aparc.gii to .label.gii & opening using the workbench; please disregard, and I apologize for taking your time.

All the best,

Lauren

On Thu, Sep 6, 2018 at 2:47 PM, Dinicola, Lauren <lmd600@g.harvard.edumailto:lmd600@g.harvard.edu> wrote: Hi Doug,

I have successfully converted an individual BA label to a .label.gii file and opened it; I have not been able to open the Gifti .aparc.annot file after attempting to convert the .annot file in Connectome Workbench. So I am wondering if a full parcellation already exists in dlabel.gii format.

Thank you again,

Lauren

On Thu, Sep 6, 2018 at 12:32 PM, Douglas N. Greve <dgreve@mgh.harvard.edumailto:dgreve@mgh.harvard.edu> wrote: what is the compatible format?

On 09/06/2018 11:54 AM, Dinicola, Lauren wrote:

Hi all,

I have been searching for the Freesurfer label or annot files for fsaverage in the formats compatible with Connectome Workbench and have not yet found them. Are these available? If not, is there a way to convert all the BA labels to then convert them to borders for viewing on fsaverage? I tried mris_convert -annot but was unsuccessful opening the output files.

Thank you very much for any help.

Lauren

---

Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edumailto:Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

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The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.

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