you could also try adding the -no-wsgcaatlas flag to the end of recon-all. but also make sure that the T1.mgz is not junk.

n.

On Thu, 2010-09-23 at 12:06 -0400, Bruce Fischl wrote:

can you check the talairach xform and see if it's ok? On Thu, 23 Sep 2010, Shugao Xia wrote:

...

Hi,

I ran recon-all on one subject, and exited with errors:

mri_watershed Error: GLOBAL region of the brain empty!

what is the reason which caused this error? Thank you in advance

Best

Shugao

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