Hi Bruce,

I performed the -autorecon-pial as a means of regenerating the surfaces as instructed on the Freesurfer skull strip tutorial. The brainmask.mgz file does not have the skull but it has some dura left over. The issue I had before was that the skull would re-appear after the subject finished processing and the surfaces would be outlined on the dura and skull.

Would it be okay if I could send screenshots of the my processed subject?

Thanks for your help.

Arsenije

________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu on behalf of freesurfer-request@nmr.mgh.harvard.edu freesurfer-request@nmr.mgh.harvard.edu Sent: Wednesday, November 22, 2017 11:09 AM To: freesurfer@nmr.mgh.harvard.edu Subject: Freesurfer Digest, Vol 165, Issue 35

Send Freesurfer mailing list submissions to freesurfer@nmr.mgh.harvard.edu

To subscribe or unsubscribe via the World Wide Web, visit https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer or, via email, send a message with subject or body 'help' to freesurfer-request@nmr.mgh.harvard.edu

You can reach the person managing the list at freesurfer-owner@nmr.mgh.harvard.edu

When replying, please edit your Subject line so it is more specific than "Re: Contents of Freesurfer digest..."

Today's Topics:

1. Job opening: postdoc in AFNI group of NIH (P Taylor) 2. Re: Problems when loading surface and mesh showing vertices (Rosalia Dacosta Aguayo)

----------------------------------------------------------------------

Message: 1 Date: Wed, 22 Nov 2017 12:50:37 -0500 From: P Taylor neon.taylor@gmail.com Subject: [Freesurfer] Job opening: postdoc in AFNI group of NIH To: "freesurfer@nmr.mgh.harvard.edu" freesurfer@nmr.mgh.harvard.edu Message-ID: CAB790KVuR-gAU__TTz0CoGSTFriKNEPCrDSSxg9wAdK3qBF+GQ@mail.gmail.com Content-Type: text/plain; charset="utf-8"

Hello-

The Scientific and Statistical Computing Core (a.k.a. the AFNI group) at the NIMH, NIH (Bethesda, MD, USA) is lookin' to hire a postdoc, particularly someone with C and/or C++ experience, with Python and OpenGL skills also being quite useful.

If you like problem solving and working with a fun group of people, then check out the attached advertisement for details. (And please feel free to forward on.)

--pt