Hi Adam,

I know in your past email you mentioned that you do not think control points could fix the situation, could you tell me why you think that? Have you tried adding some and it failed?

I took a look at your data and the wm value seems pretty low (low 70-80s) around the area near where the surfaces cut off the insula. I would suggest putting a in a few control points and running the subject again.

If this does not work, let us know and I can look into some other options. But if you can fix it in the surfaces first, it will push the gm line out and that area will get included in the aparc label later on. Right now it probably isn't being labeled because it isn't considered part of the cortex.

-Ani

On Thu, 30 Oct 2014, Adam Mezher wrote:

I uploaded one when I sent the first email, did you receive it? Uploaded to:  ftp.nmr.mgh.harvard.edu ; cd transfer/incoming

The file was titled ‘mezher_insula_fail.tar.gz’ which contains the entire FS folder for one subject. Should I go ahead and resend it?

Thanks!