Hi!
I would like to plot an histogram with values from sig.mgh across all cortical mantle (as represented in qdec or in tksurfer-overlay options). Which function would allow me to obtain/create histograms from *mgh files?
I also would like to obtain a similar histogram, but restricted to a cortical label. How I could do that?
Thanks in advance
There is no such function from the command line. You can load the data in matlab (MRIread.m) and do it there. You can load the cortical label into matlab as well with read_label.m
On 05/01/2014 10:27 AM, Dídac Vidal wrote:
Hi!
I would like to plot an histogram with values from sig.mgh across all cortical mantle (as represented in qdec or in tksurfer-overlay options). Which function would allow me to obtain/create histograms from *mgh files?
I also would like to obtain a similar histogram, but restricted to a cortical label. How I could do that?
Thanks in advance
-- Dídac Vidal Piñeiro
Dept. Psychiatry and Clinical Psychobiology Faculty of Medicine University of barcelona
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
you can also histogram surface overlays in tksurfer (and I think in freeview too now)
Bruce On Thu, 1 May 2014, Douglas N Greve wrote:
There is no such function from the command line. You can load the data in matlab (MRIread.m) and do it there. You can load the cortical label into matlab as well with read_label.m
On 05/01/2014 10:27 AM, Dídac Vidal wrote:
Hi!
I would like to plot an histogram with values from sig.mgh across all cortical mantle (as represented in qdec or in tksurfer-overlay options). Which function would allow me to obtain/create histograms from *mgh files?
I also would like to obtain a similar histogram, but restricted to a cortical label. How I could do that?
Thanks in advance
-- Dídac Vidal Piñeiro
Dept. Psychiatry and Clinical Psychobiology Faculty of Medicine University of barcelona
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
freesurfer@nmr.mgh.harvard.edu