It appears that the program mri_segstats is missing under version 4.1 of mac.
diff ~/MacLeopard.list ~/Linux64.list 38a39
/opt/freesurfer/bin/3dvolreg
62a64
/opt/freesurfer/bin/dmri_poistats
77a80
/opt/freesurfer/bin/flirt.newdefault.20080811.sch
79a83,84
/opt/freesurfer/bin/freeview /opt/freesurfer/bin/freeview.bin
258a264
/opt/freesurfer/bin/mri_seg_diff
261a268,269
/opt/freesurfer/bin/mri_segstats /opt/freesurfer/bin/mri_segstats.verbose
377a386,387
/opt/freesurfer/bin/mris_wm_volume /opt/freesurfer/bin/mris_wm_volume.verbose
This shows the binaries that are missing in the Freesurfer .dmg file that exists in the Linux64 tar.gz file.
In particular, the missing /opt/freesurfer/bin/mris_wm_volume and /opt/freesurfer/bin/mri_segstats are making the most trouble for me.
=====================================================================
In addition to the differences in available applications, the versions of VTK and Perl are also different. Linux is using vtk5.2, and Mac is using vtk 5.0. Mac uses Perl 5.8.6, and linux uses 5.8.0.
Any help would be appreciated. If I could get the two missing binaries, then I can start working again.
Hans
Hans,
I've posted those two binaries here:
ftp:/surfer/nmr.mgh.harvard.edu/transfer/outgoing/fsdev/nicks/stable/macintel-leopard
Nick
On Mon, 2008-12-01 at 15:07 -0600, Hans Johnson wrote:
It appears that the program mri_segstats is missing under version 4.1 of mac.
diff ~/MacLeopard.list ~/Linux64.list 38a39
/opt/freesurfer/bin/3dvolreg
62a64
/opt/freesurfer/bin/dmri_poistats
77a80
/opt/freesurfer/bin/flirt.newdefault.20080811.sch
79a83,84
/opt/freesurfer/bin/freeview /opt/freesurfer/bin/freeview.bin
258a264
/opt/freesurfer/bin/mri_seg_diff
261a268,269
/opt/freesurfer/bin/mri_segstats /opt/freesurfer/bin/mri_segstats.verbose
377a386,387
/opt/freesurfer/bin/mris_wm_volume /opt/freesurfer/bin/mris_wm_volume.verbose
This shows the binaries that are missing in the Freesurfer .dmg file that exists in the Linux64 tar.gz file.
In particular, the missing /opt/freesurfer/bin/mris_wm_volume and /opt/freesurfer/bin/mri_segstats are making the most trouble for me.
=====================================================================
In addition to the differences in available applications, the versions of VTK and Perl are also different. Linux is using vtk5.2, and Mac is using vtk 5.0. Mac uses Perl 5.8.6, and linux uses 5.8.0.
Any help would be appreciated. If I could get the two missing binaries, then I can start working again.
Hans
Hi Nick
This link does not work properly. Does the missing of these two files affect the normal recon-all -all processing stream?
Regards Juergen
On 2.12.2008 5:24 Uhr, "Nick Schmansky" nicks@nmr.mgh.harvard.edu wrote:
ftp:/surfer/nmr.mgh.harvard.edu/transfer/outgoing/fsdev/nicks/stable/macintel- leopard
---------------------------------------------------------- Juergen Haenggi Ph.D. (Dr. des.) Division Neuropsychology Institute of Psychology University of Zurich Binzmuehlestrasse 14, PO Box 25 8050 Zurich, Switzerland 0041 44 635 73 97 (phone office) 0041 76 445 86 84 (phone mobile) 0041 44 635 74 09 (fax office) BIN 4.D.04 (office room number) j.haenggi[at]psychologie.uzh.ch (email) http://www.psychologie.uzh.ch/neuropsy/ (website) http://www.juergenhaenggi.ch (private website) ----------------------------------------------------------
freesurfer@nmr.mgh.harvard.edu