Hi,

I've uploaded my subject to the FTP server. The file is called AL.zip. I'm really enjoying using freesurfer and I'm excited to hear what you think about this subject. Thanks so much for the help.

-- Vincent

On Thursday, March 22, 2012 at 8:25 AM, Louis Nicholas Vinke wrote:

Hi Vincent, Yep, that'll work or the web file drop, whichever you prefer.

https://surfer.nmr.mgh.harvard.edu/fswiki/FtpFileExchange

https://www.nmr.mgh.harvard.edu/facility/filedrop/index.html

-Louis

On Thu, 22 Mar 2012, Vincent wrote:

Hi Louis,

Thank you very much! I'm eager to upload something but I am stuck working another job until later today. I'll have to wait until then because I've never uploaded something to your servers and I'll have to figure out the best way to go about it. I believe I should upload to ftp://surfer.nmr.mgh.harvard.edu/transfer/incoming

Thanks again.

-- Vincent

On Thursday, March 22, 2012 at 7:42 AM, Louis Nicholas Vinke wrote:

Hi Vincent, Let me know when you upload this case, I think I may be able to help. -Louis

On Wed, 21 Mar 2012, Vincent wrote:

Hi,

I have an image that is completing the skull strip with a lot of skull remaining and it is have a large effect on the surfaces. I've tried lowering the watershed threshold as low as 5 and I've tried adding the -gcut option, but the low threshold by itself does not eliminate the skull and gcut not only fails to remove the skull but it removes cerebellum as well. There is so much skull left that I am hesitant to try manual edits, but I don't know any other options. Are there any? By the way, this brain is from an older individual with pretty substantial atrophy.

--Vincent

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