Dear Freesurfer users, I would like to know if it is possible to quickly inspect subcortical structure segmentation quality on a large number of subjects. I have read a post on that topic but i am not sure I understand how to process. Could you give a command line to do that? Thanks a lot,
Charlotte
yes, I think Louis has some code for facilitating this On Fri, 2 Mar 2012, Charlotte Bernard wrote:
Dear Freesurfer users, I would like to know if it is possible to quickly inspect subcortical structure segmentation quality on a large number of subjects. I have read a post on that topic but i am not sure I understand how to process. Could you give a command line to do that? Thanks a lot, Charlotte
Hi Charlotte, With these scripts you can take snapshots of the aseg for several subjects in tkmedit. I'd suggest including the -snaps-detailed flag to get a large sample of slices from the aseg.
https://surfer.nmr.mgh.harvard.edu/fswiki/QATools
-Louis
On Fri, 2 Mar 2012, Bruce Fischl wrote:
yes, I think Louis has some code for facilitating this On Fri, 2 Mar 2012, Charlotte Bernard wrote:
Dear Freesurfer users, I would like to know if it is possible to quickly inspect subcortical structure segmentation quality on a large number of subjects. I have read a post on that topic but i am not sure I understand how to process. Could you give a command line to do that? Thanks a lot, Charlotte
freesurfer@nmr.mgh.harvard.edu
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Bruce Fischl -
Charlotte Bernard -
Louis Nicholas Vinke