Brain mask

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Satrajit Ghosh

4 Oct 2005 4 Oct '05

1:18 a.m.

Is there an easy way to generate a brain mask like aseg.mgz but with the cortical parcellation included?

Thanks,

Satra

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Doug Greve

4 Oct 4 Oct

11:09 a.m.

I've been working on a program called mri_aparc2aseg which replaces the aseg cortical labels with the corresponding aparc label. Not quite ready yet though. I'll keep you posted.

doug

Satrajit Ghosh wrote:

...

Is there an easy way to generate a brain mask like aseg.mgz but with the cortical parcellation included?

Thanks,

Satra

Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422

Doug Greve

5:46 p.m.

OK, mri_aparc2aseg is ready for you to break (will be live in dev env tomorrow). It's pretty easy to use, made even easier by running it with --help. I've also incorporated this as a stage in recon-all.

doug

Doug Greve wrote:

...

I've been working on a program called mri_aparc2aseg which replaces the aseg cortical labels with the corresponding aparc label. Not quite ready yet though. I'll keep you posted.

doug

Satrajit Ghosh wrote:

...
Is there an easy way to generate a brain mask like aseg.mgz but with the cortical parcellation included? Thanks,

Satra

Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422

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Doug Greve
Satrajit Ghosh