Hi,
I installed the version you recommeneded and I had to make a few changes (for instance tix8.1 is installed in /usr/share instead of /usr/lib) on my machine. After creating some soft links to get around this I started up Freesurfer with the csurf command, and then inflated a brain. The brain came up like last time but I'm still getting errors in the logs, and the tools pallette still doesn't appear. However, Freesurfer no longer becomes unresponsive, it's just none of the tools are available. The errors I'm getting are:
surfer: Error sending tcl command SelectVertex -1: invalid command name "SelectVertex"
Whenever I move the mouse over the image of the brain. One thing to note, I don't have enough room on my /usr partition so I installed Freesurfer in my home space, but I did change the FREESURFER_HOME variable in SetUpFreeSurf.csh. Any thoughts on why I'm still getting tcl errors? Thanks very much.
Xander
---- Original message ----
Date: Thu, 01 Sep 2005 21:30:34 -0400 From: Nick Schmansky nicks@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Lib prob? To: xmeadow@uchicago.edu Cc: "Fornito, Alexander" Alexander.Fornito@wh.org.au,
Freesurfer Mailing List freesurfer@nmr.mgh.harvard.edu
Xander and Alex,
The special rh9 dev release is available now to download at:
http://surfer.nmr.mgh.harvard.edu/pub/dist/
Look for the file:
freesurfer-Linux-rh9-dev20050901.tar.gz
The installation readme is:
freesurfer-Linux-rh9-dev20050901.README.txt
You will also need the MINC tools if you don't already have them:
mni-Linux2-2.3-i386.tar.gz
and its readme is:
mni-Linux2-README.txt
Nick
On Fri, 2005-09-02 at 03:33 +0700, xmeadow@uchicago.edu wrote:
Hi,
I downloaded what hopefully is the correct version of blt, and after that ran your script and said everything was fine in terms of libraries. However, I did have to create two soft links. The first one was a softlink from libtix8.1.8.3 to libtix8.1.8.4 in /usr/lib. The second was a softlink from tixwish8.1.8.3 to tixwish8.1.8.4 in /usr/bin. After making both of these changes I was able to run csurf, but when I tried to view an inflated brain the brain image would come up, but then freesurfer freezes and I can't do anything. In the logs I get the following errors:
can't read "glMenuGroups(mg_FieldSignLoaded)": no such varialble surfer: Error sending tcl command tkm_SetMenuItemGroupStatus mg_FieldMaskLoaded 0:
can't read "glMenuGroups(mg_FieldMaskLoaded)": no such variable tksurfer: run tcl script: /tmp/TmpTclSurf.13311
Unfortunately these error messages mean nothing to me, so I was wondering if anyone else had seen them before. Thanks very much.
Xander
---- Original message ----
Date: Thu, 01 Sep 2005 11:08:52 -0400 From: Nick Schmansky nicks@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Lib prob? To: xmeadow@uchicago.edu, "Fornito, Alexander"
Cc: Freesurfer Mailing List freesurfer@nmr.mgh.harvard.edu
Alex and Xander,
From reading the error messages in your emails, it
appears that
freesurfer is not able to find the tcl/tk, and tix libraries
on your
platform.
We have been working on trying to provide a seamless solution
to the
problem of freesurfer finding the external libraries upon
which it
depends, on the varied platforms that it supports.
To help, later today, a new 'dev' build for rh9 that includes
many of
the necessary libraries will be posted for download. This is
not a
'stable' release (which is still undergoing testing), but a 'development' (dev) build, so it is still possible to have
installation
problems, but hopefully it will install and work for you. I
will email
you again when it is ready, and your patience is appreciated.
In the meantime, I've attached a script, called
'fs_lib_check', which
will check your system for the libraries that freesurfer
requires. I'm
curious to know the results of its output for your systems.
Just type
'fs_lib_check' to run it, and 'fs_lib_check --help' for help
text.
Nick
On Thu, 2005-09-01 at 17:06 +1000, Fornito, Alexander wrote:
Hi, We've recently installed the
freesurfer-Linux-rh9-dev20050729.tar.gz distribution along with fs_supportlibs.tar.gz.
csurf works ok, but if i try to run tksurfer, I get the
error message below. We'd appreciate any help as we've been stuck for a while.
Thanks!
tksurfer 1000027 rh white surfer: current subjects dir:
/data/flanders/work/alex/freesurfer/subjects
surfer: not in "scripts" dir ==> using cwd for session root surfer: session root data dir ($session) set to: surfer: /data/flanders/work/alex/freesurfer/subjects surfer: Reading header info from
/data/flanders/work/alex/freesurfer/subjects/1000027/mri/T1/COR-.info
INFO: Volume /tmp/mritotal_17663/orig_8_dxyz.mnc cannot be
found.
INFO: Volume /tmp/mritotal_17663/orig_8_dxyz.mnc cannot be
found.
surfer: vertices=152190, faces=304376 surfer: single buffered window Xlib: extension "XFree86-DRI" missing on display ":0.0". Tix_Init failed: version conflict for package "Tcl": have
8.3, need 8.4
surfer: using interface
/usr/local/freesurfer-linux9/lib/tcl/tksurfer.tcl
Reading /usr/local/freesurfer-linux9/lib/tcl/tkm_common.tcl Reading
/usr/local/freesurfer-linux9/lib/tcl/tkm_wrappers.tcl
Reading /usr/local/freesurfer-linux9/lib/tcl/fsgdfPlot.tcl couldn't load file "/usr/lib/libtix8.1.8.4.so":
/usr/lib/libtix8.1.8.4.so: cannot open shared object file: No such file or directorysurfer: Error sending tcl command UpdateUndoItemLabel "Nothing to Undo":
invalid command name "UpdateUndoItemLabel" surfer: Error sending tcl command
tkm_SetMenuItemGroupStatus mg_OriginalVSetLoaded 1:
can't read "glMenuGroups(mg_OriginalVSetLoaded)": no such
variable
surfer: Error sending tcl command
tkm_SetMenuItemGroupStatus mg_InflatedVSetLoaded 0:
can't read "glMenuGroups(mg_InflatedVSetLoaded)": no such
variable
surfer: Error sending tcl command
tkm_SetMenuItemGroupStatus mg_WhiteVSetLoaded 0:
can't read "glMenuGroups(mg_WhiteVSetLoaded)": no such
variable
surfer: Error sending tcl command
tkm_SetMenuItemGroupStatus mg_PialVSetLoaded 0:
can't read "glMenuGroups(mg_PialVSetLoaded)": no such
variable
surfer: Error sending tcl command
tkm_SetMenuItemGroupStatus mg_TimeCourseLoaded 0:
can't read "glMenuGroups(mg_TimeCourseLoaded)": no such
variable
surfer: Error sending tcl command
tkm_SetMenuItemGroupStatus mg_OverlayLoaded 0:
can't read "glMenuGroups(mg_OverlayLoaded)": no such
variable
surfer: Error sending tcl command
tkm_SetMenuItemGroupStatus mg_CurvatureLoaded 0:
can't read "glMenuGroups(mg_CurvatureLoaded)": no such
variable
surfer: Error sending tcl command
tkm_SetMenuItemGroupStatus mg_LabelLoaded 0:
can't read "glMenuGroups(mg_LabelLoaded)": no such variable surfer: Error sending tcl command
tkm_SetMenuItemGroupStatus mg_FieldSignLoaded 0:
can't read "glMenuGroups(mg_FieldSignLoaded)": no such
variable
surfer: Error sending tcl command
tkm_SetMenuItemGroupStatus mg_FieldMaskLoaded 0:
can't read "glMenuGroups(mg_FieldMaskLoaded)": no such
variable
% surfer: Error sending tcl command MoveToolWindow 663 670: invalid command name "MoveToolWindow" surfer: Error sending tcl command MoveToolWindow 663 670: invalid command name "MoveToolWindow" surfer: Error sending tcl command MoveToolWindow 663 670: invalid command name "MoveToolWindow"
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
fs_lib_check (4k bytes)
Xander,
The new download includes the tcl/tk/tix and blt libraries in the $FREESURFER_HOME/lib/tcltktixblt directory, so this freesurfer should not be using any prior installation of tix (such at that in /usr/share).
You do not need to delete any prior installations of tix/tcl/tk/blt. The SetUpFreeSurfer.csh script (which calls FreeSurferEnv.csh) will set the LD_LIBRARY_PATH to contain $FREESURFER_HOME/lib/tcltktixblt/lib. You can confirm this setting by typing:
env |grep LD_
and checking that the path is found in LD_LIBRARY_PATH.
Also, can you run the following commands for me?
which tkmedit ldd `which tkmedit`
The first will tell you which tkmedit you are using, to confirm that it is the one that you installed. The second command will tell you exactly which libraries tkmedit uses (note: the ` character is not the ' character, rather ` is in the upper left-hand corner of the keyboard, usually).
You should see something like this for a rh9 system:
[kani:lib] (nmr-dev-env) which tkmedit /usr/local/freesurfer/dev/bin//tkmedit [kani:lib] (nmr-dev-env) ldd `which tkmedit` libtix8.1.8.3.so => /usr/local/freesurfer/dev/lib/tcltktixblt/lib/libtix8.1.8.3.so (0x40017000) libtk8.4.so => /usr/local/freesurfer/dev/lib/tcltktixblt/lib/libtk8.4.so (0x40051000) libtcl8.4.so => /usr/local/freesurfer/dev/lib/tcltktixblt/lib/libtcl8.4.so (0x40111000) libglut.so.3 => /usr/lib/libglut.so.3 (0x401be000) libSM.so.6 => /usr/X11R6/lib/libSM.so.6 (0x401f3000) libICE.so.6 => /usr/X11R6/lib/libICE.so.6 (0x401fc000) libXmu.so.6 => /usr/X11R6/lib/libXmu.so.6 (0x40214000) libXi.so.6 => /usr/X11R6/lib/libXi.so.6 (0x4022a000) libGLU.so.1 => /usr/X11R6/lib/libGLU.so.1 (0x40232000) libGL.so.1 => /usr/lib/tls/libGL.so.1 (0x402af000) libX11.so.6 => /usr/X11R6/lib/libX11.so.6 (0x40318000) libgsl.so.0 => /usr/lib/libgsl.so.0 (0x403f7000) libgslcblas.so.0 => /usr/lib/libgslcblas.so.0 (0x40570000) libjpeg.so.62 => /usr/lib/libjpeg.so.62 (0x405a2000) libtiff.so.3 => /usr/lib/libtiff.so.3 (0x405c0000) libz.so.1 => /usr/lib/libz.so.1 (0x40602000) libm.so.6 => /lib/tls/libm.so.6 (0x40610000) libcrypt.so.1 => /lib/libcrypt.so.1 (0x40632000) libc.so.6 => /lib/tls/libc.so.6 (0x42000000) libdl.so.2 => /lib/libdl.so.2 (0x40660000) libXt.so.6 => /usr/X11R6/lib/libXt.so.6 (0x40664000) libXext.so.6 => /usr/X11R6/lib/libXext.so.6 (0x406b6000) libstdc++.so.5 => /usr/lib/libstdc++.so.5 (0x406c4000) libgcc_s.so.1 => /lib/libgcc_s.so.1 (0x40777000) libGLcore.so.1 => /usr/lib/tls/libGLcore.so.1 (0x40780000) /lib/ld-linux.so.2 => /lib/ld-linux.so.2 (0x40000000) [kani:lib] (nmr-dev-env)
Notice that the tix/tk/tcl libraries are found in the new freesurfer/dev installation path. It is necessary to have consistency among these libraries (BLT is loaded dynamically).
I'm curious to know the output of this for your machine. It seems to be difficult for us to predict exactly how a rh9 machine will respond to our install.
Thanks! And again, I appreciate your patience! We're trying to make this install easier to use.
Nick
On Fri, 2005-09-02 at 22:24 +0700, xmeadow@uchicago.edu wrote:
Hi,
I installed the version you recommeneded and I had to make a few changes (for instance tix8.1 is installed in /usr/share instead of /usr/lib) on my machine. After creating some soft links to get around this I started up Freesurfer with the csurf command, and then inflated a brain. The brain came up like last time but I'm still getting errors in the logs, and the tools pallette still doesn't appear. However, Freesurfer no longer becomes unresponsive, it's just none of the tools are available. The errors I'm getting are:
surfer: Error sending tcl command SelectVertex -1: invalid command name "SelectVertex"
Whenever I move the mouse over the image of the brain. One thing to note, I don't have enough room on my /usr partition so I installed Freesurfer in my home space, but I did change the FREESURFER_HOME variable in SetUpFreeSurf.csh. Any thoughts on why I'm still getting tcl errors? Thanks very much.
Xander
---- Original message ----
Date: Thu, 01 Sep 2005 21:30:34 -0400 From: Nick Schmansky nicks@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Lib prob? To: xmeadow@uchicago.edu Cc: "Fornito, Alexander" Alexander.Fornito@wh.org.au,
Freesurfer Mailing List freesurfer@nmr.mgh.harvard.edu
Xander and Alex,
The special rh9 dev release is available now to download at:
http://surfer.nmr.mgh.harvard.edu/pub/dist/
Look for the file:
freesurfer-Linux-rh9-dev20050901.tar.gz
The installation readme is:
freesurfer-Linux-rh9-dev20050901.README.txt
You will also need the MINC tools if you don't already have them:
mni-Linux2-2.3-i386.tar.gz
and its readme is:
mni-Linux2-README.txt
Nick
On Fri, 2005-09-02 at 03:33 +0700, xmeadow@uchicago.edu wrote:
Hi,
I downloaded what hopefully is the correct version of blt, and after that ran your script and said everything was fine in terms of libraries. However, I did have to create two soft links. The first one was a softlink from libtix8.1.8.3 to libtix8.1.8.4 in /usr/lib. The second was a softlink from tixwish8.1.8.3 to tixwish8.1.8.4 in /usr/bin. After making both of these changes I was able to run csurf, but when I tried to view an inflated brain the brain image would come up, but then freesurfer freezes and I can't do anything. In the logs I get the following errors:
can't read "glMenuGroups(mg_FieldSignLoaded)": no such varialble surfer: Error sending tcl command tkm_SetMenuItemGroupStatus mg_FieldMaskLoaded 0:
can't read "glMenuGroups(mg_FieldMaskLoaded)": no such variable tksurfer: run tcl script: /tmp/TmpTclSurf.13311
Unfortunately these error messages mean nothing to me, so I was wondering if anyone else had seen them before. Thanks very much.
Xander
---- Original message ----
Date: Thu, 01 Sep 2005 11:08:52 -0400 From: Nick Schmansky nicks@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Lib prob? To: xmeadow@uchicago.edu, "Fornito, Alexander"
Cc: Freesurfer Mailing List freesurfer@nmr.mgh.harvard.edu
Alex and Xander,
From reading the error messages in your emails, it
appears that
freesurfer is not able to find the tcl/tk, and tix libraries
on your
platform.
We have been working on trying to provide a seamless solution
to the
problem of freesurfer finding the external libraries upon
which it
depends, on the varied platforms that it supports.
To help, later today, a new 'dev' build for rh9 that includes
many of
the necessary libraries will be posted for download. This is
not a
'stable' release (which is still undergoing testing), but a 'development' (dev) build, so it is still possible to have
installation
problems, but hopefully it will install and work for you. I
will email
you again when it is ready, and your patience is appreciated.
In the meantime, I've attached a script, called
'fs_lib_check', which
will check your system for the libraries that freesurfer
requires. I'm
curious to know the results of its output for your systems.
Just type
'fs_lib_check' to run it, and 'fs_lib_check --help' for help
text.
Nick
On Thu, 2005-09-01 at 17:06 +1000, Fornito, Alexander wrote:
Hi, We've recently installed the
freesurfer-Linux-rh9-dev20050729.tar.gz distribution along with fs_supportlibs.tar.gz.
csurf works ok, but if i try to run tksurfer, I get the
error message below. We'd appreciate any help as we've been stuck for a while.
Thanks!
tksurfer 1000027 rh white surfer: current subjects dir:
/data/flanders/work/alex/freesurfer/subjects
surfer: not in "scripts" dir ==> using cwd for session root surfer: session root data dir ($session) set to: surfer: /data/flanders/work/alex/freesurfer/subjects surfer: Reading header info from
/data/flanders/work/alex/freesurfer/subjects/1000027/mri/T1/COR-.info
INFO: Volume /tmp/mritotal_17663/orig_8_dxyz.mnc cannot be
found.
INFO: Volume /tmp/mritotal_17663/orig_8_dxyz.mnc cannot be
found.
surfer: vertices=152190, faces=304376 surfer: single buffered window Xlib: extension "XFree86-DRI" missing on display ":0.0". Tix_Init failed: version conflict for package "Tcl": have
8.3, need 8.4
surfer: using interface
/usr/local/freesurfer-linux9/lib/tcl/tksurfer.tcl
Reading /usr/local/freesurfer-linux9/lib/tcl/tkm_common.tcl Reading
/usr/local/freesurfer-linux9/lib/tcl/tkm_wrappers.tcl
Reading /usr/local/freesurfer-linux9/lib/tcl/fsgdfPlot.tcl couldn't load file "/usr/lib/libtix8.1.8.4.so":
/usr/lib/libtix8.1.8.4.so: cannot open shared object file: No such file or directorysurfer: Error sending tcl command UpdateUndoItemLabel "Nothing to Undo":
invalid command name "UpdateUndoItemLabel" surfer: Error sending tcl command
tkm_SetMenuItemGroupStatus mg_OriginalVSetLoaded 1:
can't read "glMenuGroups(mg_OriginalVSetLoaded)": no such
variable
surfer: Error sending tcl command
tkm_SetMenuItemGroupStatus mg_InflatedVSetLoaded 0:
can't read "glMenuGroups(mg_InflatedVSetLoaded)": no such
variable
surfer: Error sending tcl command
tkm_SetMenuItemGroupStatus mg_WhiteVSetLoaded 0:
can't read "glMenuGroups(mg_WhiteVSetLoaded)": no such
variable
surfer: Error sending tcl command
tkm_SetMenuItemGroupStatus mg_PialVSetLoaded 0:
can't read "glMenuGroups(mg_PialVSetLoaded)": no such
variable
surfer: Error sending tcl command
tkm_SetMenuItemGroupStatus mg_TimeCourseLoaded 0:
can't read "glMenuGroups(mg_TimeCourseLoaded)": no such
variable
surfer: Error sending tcl command
tkm_SetMenuItemGroupStatus mg_OverlayLoaded 0:
can't read "glMenuGroups(mg_OverlayLoaded)": no such
variable
surfer: Error sending tcl command
tkm_SetMenuItemGroupStatus mg_CurvatureLoaded 0:
can't read "glMenuGroups(mg_CurvatureLoaded)": no such
variable
surfer: Error sending tcl command
tkm_SetMenuItemGroupStatus mg_LabelLoaded 0:
can't read "glMenuGroups(mg_LabelLoaded)": no such variable surfer: Error sending tcl command
tkm_SetMenuItemGroupStatus mg_FieldSignLoaded 0:
can't read "glMenuGroups(mg_FieldSignLoaded)": no such
variable
surfer: Error sending tcl command
tkm_SetMenuItemGroupStatus mg_FieldMaskLoaded 0:
can't read "glMenuGroups(mg_FieldMaskLoaded)": no such
variable
% surfer: Error sending tcl command MoveToolWindow 663 670: invalid command name "MoveToolWindow" surfer: Error sending tcl command MoveToolWindow 663 670: invalid command name "MoveToolWindow" surfer: Error sending tcl command MoveToolWindow 663 670: invalid command name "MoveToolWindow"
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
fs_lib_check (4k bytes)
Hi,
Everything was just as you predicted, but I still get the tcl and tk errors.
source freesurfer/dev/SetUpFreeSurfer.csh
Setting up environment for FreeSurfer/FS-FAST (and FSL) FREESURFER_HOME /home/people/xmeadow/freesurfer/dev FSFAST_HOME /home/people/xmeadow/freesurfer/dev/fsfast SUBJECTS_DIR /home/people/xmeadow/freesurfer/dev/subjects FUNCTIONALS_DIR /home/people/xmeadow/freesurfer/dev/sessions MINC_BIN_DIR /usr/pubsw/packages/mni/current/bin MINC_LIB_DIR /usr/pubsw/packages/mni/current/lib PERL5LIB /usr/pubsw/packages/mni/current/lib/perl5/5.8.5
echo $LD_LIBRARY_PATH
/usr/pubsw/packages/mni/current/lib:/home/people/xmeadow/freesurfer/ dev/lib/tclt ktixblt/lib:/home/people/xmeadow/freesurfer/dev/lib/
which tkmedit
/home/people/xmeadow/freesurfer/dev/bin//tkmedit
ldd `which tkmedit`
libtix8.1.8.3.so => /home/people/xmeadow/freesurfer/dev/lib/tcltktixblt/ lib/libtix8.1.8.3.so (0x005a2000) libtk8.4.so => /home/people/xmeadow/freesurfer/dev/lib/tcltktixblt/lib/l ibtk8.4.so (0x004c1000) libtcl8.4.so => /home/people/xmeadow/freesurfer/dev/lib/tcltktixblt/lib/ libtcl8.4.so (0x003b8000) libglut.so.3 => /usr/lib/libglut.so.3 (0x007ec000) libSM.so.6 => /usr/X11R6/lib/libSM.so.6 (0x00af8000) libICE.so.6 => /usr/X11R6/lib/libICE.so.6 (0x00b02000) libXmu.so.6 => /usr/X11R6/lib/libXmu.so.6 (0x00123000) libXi.so.6 => /usr/X11R6/lib/libXi.so.6 (0x00101000) libGLU.so.1 => /usr/X11R6/lib/libGLU.so.1 (0x00139000) libGL.so.1 => /usr/X11R6/lib/libGL.so.1 (0x001b0000) libX11.so.6 => /usr/X11R6/lib/libX11.so.6 (0x009f9000) libgsl.so.0 => /usr/lib/libgsl.so.0 (0x0021e000) libgslcblas.so.0 => /usr/lib/libgslcblas.so.0 (0x00382000) libjpeg.so.62 => /usr/lib/libjpeg.so.62 (0x00dad000) libtiff.so.3 => /usr/lib/libtiff.so.3 (0x04a99000) libz.so.1 => /usr/lib/libz.so.1 (0x00ad2000) libm.so.6 => /lib/tls/libm.so.6 (0x00451000) libcrypt.so.1 => /lib/libcrypt.so.1 (0x03e64000) libc.so.6 => /lib/tls/libc.so.6 (0x008a3000) libdl.so.2 => /lib/libdl.so.2 (0x009f3000) libXext.so.6 => /usr/X11R6/lib/libXext.so.6 (0x00ac2000) libXxf86vm.so.1 => /usr/X11R6/lib/libXxf86vm.so.1 (0x003b2000) libXt.so.6 => /usr/X11R6/lib/libXt.so.6 (0x005dc000) libstdc++.so.6 => /usr/lib/libstdc++.so.6 (0x00ce0000) libgcc_s.so.1 => /lib/libgcc_s.so.1 (0x00cd6000) libpthread.so.0 => /lib/tls/libpthread.so.0 (0x00ae4000) /lib/ld-linux.so.2 (0x0088a000)
Also, I am using the rh9 installation, because it is the latest redhat installation available, but the machine is currently running Enterprise version 4.
Thanks very much.
Xander
On Sep 2, 2005, at 10:43 AM, Nick Schmansky wrote:
Xander,
The new download includes the tcl/tk/tix and blt libraries in the $FREESURFER_HOME/lib/tcltktixblt directory, so this freesurfer should not be using any prior installation of tix (such at that in /usr/share).
You do not need to delete any prior installations of tix/tcl/tk/blt. The SetUpFreeSurfer.csh script (which calls FreeSurferEnv.csh) will set the LD_LIBRARY_PATH to contain $FREESURFER_HOME/lib/tcltktixblt/lib. You can confirm this setting by typing:
env |grep LD_
and checking that the path is found in LD_LIBRARY_PATH.
Also, can you run the following commands for me?
which tkmedit ldd `which tkmedit`
The first will tell you which tkmedit you are using, to confirm that it is the one that you installed. The second command will tell you exactly which libraries tkmedit uses (note: the ` character is not the ' character, rather ` is in the upper left-hand corner of the keyboard, usually).
You should see something like this for a rh9 system:
[kani:lib] (nmr-dev-env) which tkmedit /usr/local/freesurfer/dev/bin//tkmedit [kani:lib] (nmr-dev-env) ldd `which tkmedit` libtix8.1.8.3.so => /usr/local/freesurfer/dev/lib/tcltktixblt/lib/libtix8.1.8.3.so (0x40017000) libtk8.4.so => /usr/local/freesurfer/dev/lib/tcltktixblt/lib/libtk8.4.so (0x40051000) libtcl8.4.so => /usr/local/freesurfer/dev/lib/tcltktixblt/lib/libtcl8.4.so (0x40111000) libglut.so.3 => /usr/lib/libglut.so.3 (0x401be000) libSM.so.6 => /usr/X11R6/lib/libSM.so.6 (0x401f3000) libICE.so.6 => /usr/X11R6/lib/libICE.so.6 (0x401fc000) libXmu.so.6 => /usr/X11R6/lib/libXmu.so.6 (0x40214000) libXi.so.6 => /usr/X11R6/lib/libXi.so.6 (0x4022a000) libGLU.so.1 => /usr/X11R6/lib/libGLU.so.1 (0x40232000) libGL.so.1 => /usr/lib/tls/libGL.so.1 (0x402af000) libX11.so.6 => /usr/X11R6/lib/libX11.so.6 (0x40318000) libgsl.so.0 => /usr/lib/libgsl.so.0 (0x403f7000) libgslcblas.so.0 => /usr/lib/libgslcblas.so.0 (0x40570000) libjpeg.so.62 => /usr/lib/libjpeg.so.62 (0x405a2000) libtiff.so.3 => /usr/lib/libtiff.so.3 (0x405c0000) libz.so.1 => /usr/lib/libz.so.1 (0x40602000) libm.so.6 => /lib/tls/libm.so.6 (0x40610000) libcrypt.so.1 => /lib/libcrypt.so.1 (0x40632000) libc.so.6 => /lib/tls/libc.so.6 (0x42000000) libdl.so.2 => /lib/libdl.so.2 (0x40660000) libXt.so.6 => /usr/X11R6/lib/libXt.so.6 (0x40664000) libXext.so.6 => /usr/X11R6/lib/libXext.so.6 (0x406b6000) libstdc++.so.5 => /usr/lib/libstdc++.so.5 (0x406c4000) libgcc_s.so.1 => /lib/libgcc_s.so.1 (0x40777000) libGLcore.so.1 => /usr/lib/tls/libGLcore.so.1 (0x40780000) /lib/ld-linux.so.2 => /lib/ld-linux.so.2 (0x40000000) [kani:lib] (nmr-dev-env)
Notice that the tix/tk/tcl libraries are found in the new freesurfer/dev installation path. It is necessary to have consistency among these libraries (BLT is loaded dynamically).
I'm curious to know the output of this for your machine. It seems to be difficult for us to predict exactly how a rh9 machine will respond to our install.
Thanks! And again, I appreciate your patience! We're trying to make this install easier to use.
Nick
On Fri, 2005-09-02 at 22:24 +0700, xmeadow@uchicago.edu wrote:
Hi,
I installed the version you recommeneded and I had to make a few changes (for instance tix8.1 is installed in /usr/share instead of /usr/lib) on my machine. After creating some soft links to get around this I started up Freesurfer with the csurf command, and then inflated a brain. The brain came up like last time but I'm still getting errors in the logs, and the tools pallette still doesn't appear. However, Freesurfer no longer becomes unresponsive, it's just none of the tools are available. The errors I'm getting are:
surfer: Error sending tcl command SelectVertex -1: invalid command name "SelectVertex"
Whenever I move the mouse over the image of the brain. One thing to note, I don't have enough room on my /usr partition so I installed Freesurfer in my home space, but I did change the FREESURFER_HOME variable in SetUpFreeSurf.csh. Any thoughts on why I'm still getting tcl errors? Thanks very much.
Xander
---- Original message ----
Date: Thu, 01 Sep 2005 21:30:34 -0400 From: Nick Schmansky nicks@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Lib prob? To: xmeadow@uchicago.edu Cc: "Fornito, Alexander" Alexander.Fornito@wh.org.au,
Freesurfer Mailing List freesurfer@nmr.mgh.harvard.edu
Xander and Alex,
The special rh9 dev release is available now to download at:
http://surfer.nmr.mgh.harvard.edu/pub/dist/
Look for the file:
freesurfer-Linux-rh9-dev20050901.tar.gz
The installation readme is:
freesurfer-Linux-rh9-dev20050901.README.txt
You will also need the MINC tools if you don't already have them:
mni-Linux2-2.3-i386.tar.gz
and its readme is:
mni-Linux2-README.txt
Nick
On Fri, 2005-09-02 at 03:33 +0700, xmeadow@uchicago.edu wrote:
Hi,
I downloaded what hopefully is the correct version of blt, and after that ran your script and said everything was fine in terms of libraries. However, I did have to create two soft links. The first one was a softlink from libtix8.1.8.3 to libtix8.1.8.4 in /usr/lib. The second was a softlink from tixwish8.1.8.3 to tixwish8.1.8.4 in /usr/bin. After making both of these changes I was able to run csurf, but when I tried to view an inflated brain the brain image would come up, but then freesurfer freezes and I can't do anything. In the logs I get the following errors:
can't read "glMenuGroups(mg_FieldSignLoaded)": no such varialble surfer: Error sending tcl command tkm_SetMenuItemGroupStatus mg_FieldMaskLoaded 0:
can't read "glMenuGroups(mg_FieldMaskLoaded)": no such variable tksurfer: run tcl script: /tmp/TmpTclSurf.13311
Unfortunately these error messages mean nothing to me, so I was wondering if anyone else had seen them before. Thanks very much.
Xander
---- Original message ----
Date: Thu, 01 Sep 2005 11:08:52 -0400 From: Nick Schmansky nicks@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Lib prob? To: xmeadow@uchicago.edu, "Fornito, Alexander"
Cc: Freesurfer Mailing List freesurfer@nmr.mgh.harvard.edu
Alex and Xander,
From reading the error messages in your emails, it
appears that
freesurfer is not able to find the tcl/tk, and tix libraries
on your
platform.
We have been working on trying to provide a seamless solution
to the
problem of freesurfer finding the external libraries upon
which it
depends, on the varied platforms that it supports.
To help, later today, a new 'dev' build for rh9 that includes
many of
the necessary libraries will be posted for download. This is
not a
'stable' release (which is still undergoing testing), but a 'development' (dev) build, so it is still possible to have
installation
problems, but hopefully it will install and work for you. I
will email
you again when it is ready, and your patience is appreciated.
In the meantime, I've attached a script, called
'fs_lib_check', which
will check your system for the libraries that freesurfer
requires. I'm
curious to know the results of its output for your systems.
Just type
'fs_lib_check' to run it, and 'fs_lib_check --help' for help
text.
Nick
On Thu, 2005-09-01 at 17:06 +1000, Fornito, Alexander wrote:
Hi, We've recently installed the
freesurfer-Linux-rh9-dev20050729.tar.gz distribution along with fs_supportlibs.tar.gz.
csurf works ok, but if i try to run tksurfer, I get the
error message below. We'd appreciate any help as we've been stuck for a while.
Thanks!
tksurfer 1000027 rh white surfer: current subjects dir:
/data/flanders/work/alex/freesurfer/subjects
surfer: not in "scripts" dir ==> using cwd for session root surfer: session root data dir ($session) set to: surfer: /data/flanders/work/alex/freesurfer/subjects surfer: Reading header info from
/data/flanders/work/alex/freesurfer/subjects/1000027/mri/T1/COR-.info
INFO: Volume /tmp/mritotal_17663/orig_8_dxyz.mnc cannot be
found.
INFO: Volume /tmp/mritotal_17663/orig_8_dxyz.mnc cannot be
found.
surfer: vertices=152190, faces=304376 surfer: single buffered window Xlib: extension "XFree86-DRI" missing on display ":0.0". Tix_Init failed: version conflict for package "Tcl": have
8.3, need 8.4
surfer: using interface
/usr/local/freesurfer-linux9/lib/tcl/tksurfer.tcl
Reading /usr/local/freesurfer-linux9/lib/tcl/tkm_common.tcl Reading
/usr/local/freesurfer-linux9/lib/tcl/tkm_wrappers.tcl
Reading /usr/local/freesurfer-linux9/lib/tcl/fsgdfPlot.tcl couldn't load file "/usr/lib/libtix8.1.8.4.so":
/usr/lib/libtix8.1.8.4.so: cannot open shared object file: No such file or directorysurfer: Error sending tcl command UpdateUndoItemLabel "Nothing to Undo":
invalid command name "UpdateUndoItemLabel" surfer: Error sending tcl command
tkm_SetMenuItemGroupStatus mg_OriginalVSetLoaded 1:
can't read "glMenuGroups(mg_OriginalVSetLoaded)": no such
variable
surfer: Error sending tcl command
tkm_SetMenuItemGroupStatus mg_InflatedVSetLoaded 0:
can't read "glMenuGroups(mg_InflatedVSetLoaded)": no such
variable
surfer: Error sending tcl command
tkm_SetMenuItemGroupStatus mg_WhiteVSetLoaded 0:
can't read "glMenuGroups(mg_WhiteVSetLoaded)": no such
variable
surfer: Error sending tcl command
tkm_SetMenuItemGroupStatus mg_PialVSetLoaded 0:
can't read "glMenuGroups(mg_PialVSetLoaded)": no such
variable
surfer: Error sending tcl command
tkm_SetMenuItemGroupStatus mg_TimeCourseLoaded 0:
can't read "glMenuGroups(mg_TimeCourseLoaded)": no such
variable
surfer: Error sending tcl command
tkm_SetMenuItemGroupStatus mg_OverlayLoaded 0:
can't read "glMenuGroups(mg_OverlayLoaded)": no such
variable
surfer: Error sending tcl command
tkm_SetMenuItemGroupStatus mg_CurvatureLoaded 0:
can't read "glMenuGroups(mg_CurvatureLoaded)": no such
variable
surfer: Error sending tcl command
tkm_SetMenuItemGroupStatus mg_LabelLoaded 0:
can't read "glMenuGroups(mg_LabelLoaded)": no such variable surfer: Error sending tcl command
tkm_SetMenuItemGroupStatus mg_FieldSignLoaded 0:
can't read "glMenuGroups(mg_FieldSignLoaded)": no such
variable
surfer: Error sending tcl command
tkm_SetMenuItemGroupStatus mg_FieldMaskLoaded 0:
can't read "glMenuGroups(mg_FieldMaskLoaded)": no such
variable
% surfer: Error sending tcl command MoveToolWindow 663 670: invalid command name "MoveToolWindow" surfer: Error sending tcl command MoveToolWindow 663 670: invalid command name "MoveToolWindow" surfer: Error sending tcl command MoveToolWindow 663 670: invalid command name "MoveToolWindow"
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
fs_lib_check (4k bytes)
Xander,
Can you try executing these two statements after issuing the source SetUpFreeSurfer.csh command?
set path = ( $FREESURFER_HOME/lib/tcltktixblt/bin $path ) rehash
This will add to the binary search path the location of the tcl-tk-tix- blt tools. I noticed it is missing from the FreeSurferEnv.csh setup script. It is possible that the problem you are seeing is because some of the old tools are being used (from prior installed search paths).
Can you then try running tkmedit, such as like this:
tkmedit <subjectname> orig
(replacing <subjectname> with your subject id).
Thanks,
Nick
On Fri, 2005-09-02 at 11:39 -0500, Xander Meadow wrote:
Hi,
Everything was just as you predicted, but I still get the tcl and tk errors.
source freesurfer/dev/SetUpFreeSurfer.csh
Setting up environment for FreeSurfer/FS-FAST (and FSL) FREESURFER_HOME /home/people/xmeadow/freesurfer/dev FSFAST_HOME /home/people/xmeadow/freesurfer/dev/fsfast SUBJECTS_DIR /home/people/xmeadow/freesurfer/dev/subjects FUNCTIONALS_DIR /home/people/xmeadow/freesurfer/dev/sessions MINC_BIN_DIR /usr/pubsw/packages/mni/current/bin MINC_LIB_DIR /usr/pubsw/packages/mni/current/lib PERL5LIB /usr/pubsw/packages/mni/current/lib/perl5/5.8.5
echo $LD_LIBRARY_PATH
/usr/pubsw/packages/mni/current/lib:/home/people/xmeadow/freesurfer/ dev/lib/tclt ktixblt/lib:/home/people/xmeadow/freesurfer/dev/lib/
which tkmedit
/home/people/xmeadow/freesurfer/dev/bin//tkmedit
ldd `which tkmedit`
libtix8.1.8.3.so =>/home/people/xmeadow/freesurfer/dev/lib/tcltktixblt/ lib/libtix8.1.8.3.so (0x005a2000) libtk8.4.so => /home/people/xmeadow/freesurfer/dev/lib/tcltktixblt/lib/l ibtk8.4.so (0x004c1000) libtcl8.4.so => /home/people/xmeadow/freesurfer/dev/lib/tcltktixblt/lib/ libtcl8.4.so (0x003b8000) libglut.so.3 => /usr/lib/libglut.so.3 (0x007ec000) libSM.so.6 => /usr/X11R6/lib/libSM.so.6 (0x00af8000) libICE.so.6 => /usr/X11R6/lib/libICE.so.6 (0x00b02000) libXmu.so.6 => /usr/X11R6/lib/libXmu.so.6 (0x00123000) libXi.so.6 => /usr/X11R6/lib/libXi.so.6 (0x00101000) libGLU.so.1 => /usr/X11R6/lib/libGLU.so.1 (0x00139000) libGL.so.1 => /usr/X11R6/lib/libGL.so.1 (0x001b0000) libX11.so.6 => /usr/X11R6/lib/libX11.so.6 (0x009f9000) libgsl.so.0 => /usr/lib/libgsl.so.0 (0x0021e000) libgslcblas.so.0 => /usr/lib/libgslcblas.so.0 (0x00382000) libjpeg.so.62 => /usr/lib/libjpeg.so.62 (0x00dad000) libtiff.so.3 => /usr/lib/libtiff.so.3 (0x04a99000) libz.so.1 => /usr/lib/libz.so.1 (0x00ad2000) libm.so.6 => /lib/tls/libm.so.6 (0x00451000) libcrypt.so.1 => /lib/libcrypt.so.1 (0x03e64000) libc.so.6 => /lib/tls/libc.so.6 (0x008a3000) libdl.so.2 => /lib/libdl.so.2 (0x009f3000) libXext.so.6 => /usr/X11R6/lib/libXext.so.6 (0x00ac2000) libXxf86vm.so.1 => /usr/X11R6/lib/libXxf86vm.so.1 (0x003b2000) libXt.so.6 => /usr/X11R6/lib/libXt.so.6 (0x005dc000) libstdc++.so.6 => /usr/lib/libstdc++.so.6 (0x00ce0000) libgcc_s.so.1 => /lib/libgcc_s.so.1 (0x00cd6000) libpthread.so.0 => /lib/tls/libpthread.so.0 (0x00ae4000) /lib/ld-linux.so.2 (0x0088a000)
Also, I am using the rh9 installation, because it is the latest redhat installation available, but the machine is currently running Enterprise version 4.
Thanks very much.
Xander
On Sep 2, 2005, at 10:43 AM, Nick Schmansky wrote:
Xander,
The new download includes the tcl/tk/tix and blt libraries in the $FREESURFER_HOME/lib/tcltktixblt directory, so this freesurfer should not be using any prior installation of tix (such at that in /usr/share).
You do not need to delete any prior installations of tix/tcl/tk/blt. The SetUpFreeSurfer.csh script (which calls FreeSurferEnv.csh) will set the LD_LIBRARY_PATH to contain $FREESURFER_HOME/lib/tcltktixblt/lib. You can confirm this setting by typing:
env |grep LD_
and checking that the path is found in LD_LIBRARY_PATH.
Also, can you run the following commands for me?
which tkmedit ldd `which tkmedit`
The first will tell you which tkmedit you are using, to confirm that it is the one that you installed. The second command will tell you exactly which libraries tkmedit uses (note: the ` character is not the ' character, rather ` is in the upper left-hand corner of the keyboard, usually).
You should see something like this for a rh9 system:
[kani:lib] (nmr-dev-env) which tkmedit /usr/local/freesurfer/dev/bin//tkmedit [kani:lib] (nmr-dev-env) ldd `which tkmedit` libtix8.1.8.3.so => /usr/local/freesurfer/dev/lib/tcltktixblt/lib/libtix8.1.8.3.so (0x40017000) libtk8.4.so => /usr/local/freesurfer/dev/lib/tcltktixblt/lib/libtk8.4.so (0x40051000) libtcl8.4.so => /usr/local/freesurfer/dev/lib/tcltktixblt/lib/libtcl8.4.so (0x40111000) libglut.so.3 => /usr/lib/libglut.so.3 (0x401be000) libSM.so.6 => /usr/X11R6/lib/libSM.so.6 (0x401f3000) libICE.so.6 => /usr/X11R6/lib/libICE.so.6 (0x401fc000) libXmu.so.6 => /usr/X11R6/lib/libXmu.so.6 (0x40214000) libXi.so.6 => /usr/X11R6/lib/libXi.so.6 (0x4022a000) libGLU.so.1 => /usr/X11R6/lib/libGLU.so.1 (0x40232000) libGL.so.1 => /usr/lib/tls/libGL.so.1 (0x402af000) libX11.so.6 => /usr/X11R6/lib/libX11.so.6 (0x40318000) libgsl.so.0 => /usr/lib/libgsl.so.0 (0x403f7000) libgslcblas.so.0 => /usr/lib/libgslcblas.so.0 (0x40570000) libjpeg.so.62 => /usr/lib/libjpeg.so.62 (0x405a2000) libtiff.so.3 => /usr/lib/libtiff.so.3 (0x405c0000) libz.so.1 => /usr/lib/libz.so.1 (0x40602000) libm.so.6 => /lib/tls/libm.so.6 (0x40610000) libcrypt.so.1 => /lib/libcrypt.so.1 (0x40632000) libc.so.6 => /lib/tls/libc.so.6 (0x42000000) libdl.so.2 => /lib/libdl.so.2 (0x40660000) libXt.so.6 => /usr/X11R6/lib/libXt.so.6 (0x40664000) libXext.so.6 => /usr/X11R6/lib/libXext.so.6 (0x406b6000) libstdc++.so.5 => /usr/lib/libstdc++.so.5 (0x406c4000) libgcc_s.so.1 => /lib/libgcc_s.so.1 (0x40777000) libGLcore.so.1 => /usr/lib/tls/libGLcore.so.1 (0x40780000) /lib/ld-linux.so.2 => /lib/ld-linux.so.2 (0x40000000) [kani:lib] (nmr-dev-env)
Notice that the tix/tk/tcl libraries are found in the new freesurfer/dev installation path. It is necessary to have consistency among these libraries (BLT is loaded dynamically).
I'm curious to know the output of this for your machine. It seems to be difficult for us to predict exactly how a rh9 machine will respond to our install.
Thanks! And again, I appreciate your patience! We're trying to make this install easier to use.
Nick
On Fri, 2005-09-02 at 22:24 +0700, xmeadow@uchicago.edu wrote:
Hi,
I installed the version you recommeneded and I had to make a few changes (for instance tix8.1 is installed in /usr/share instead of /usr/lib) on my machine. After creating some soft links to get around this I started up Freesurfer with the csurf command, and then inflated a brain. The brain came up like last time but I'm still getting errors in the logs, and the tools pallette still doesn't appear. However, Freesurfer no longer becomes unresponsive, it's just none of the tools are available. The errors I'm getting are:
surfer: Error sending tcl command SelectVertex -1: invalid command name "SelectVertex"
Whenever I move the mouse over the image of the brain. One thing to note, I don't have enough room on my /usr partition so I installed Freesurfer in my home space, but I did change the FREESURFER_HOME variable in SetUpFreeSurf.csh. Any thoughts on why I'm still getting tcl errors? Thanks very much.
Xander
---- Original message ----
Date: Thu, 01 Sep 2005 21:30:34 -0400 From: Nick Schmansky nicks@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Lib prob? To: xmeadow@uchicago.edu Cc: "Fornito, Alexander" Alexander.Fornito@wh.org.au,
Freesurfer Mailing List freesurfer@nmr.mgh.harvard.edu
Xander and Alex,
The special rh9 dev release is available now to download at:
http://surfer.nmr.mgh.harvard.edu/pub/dist/
Look for the file:
freesurfer-Linux-rh9-dev20050901.tar.gz
The installation readme is:
freesurfer-Linux-rh9-dev20050901.README.txt
You will also need the MINC tools if you don't already have them:
mni-Linux2-2.3-i386.tar.gz
and its readme is:
mni-Linux2-README.txt
Nick
On Fri, 2005-09-02 at 03:33 +0700, xmeadow@uchicago.edu wrote:
Hi,
I downloaded what hopefully is the correct version of blt, and after that ran your script and said everything was fine in terms of libraries. However, I did have to create two soft links. The first one was a softlink from libtix8.1.8.3 to libtix8.1.8.4 in /usr/lib. The second was a softlink from tixwish8.1.8.3 to tixwish8.1.8.4 in /usr/bin. After making both of these changes I was able to run csurf, but when I tried to view an inflated brain the brain image would come up, but then freesurfer freezes and I can't do anything. In the logs I get the following errors:
can't read "glMenuGroups(mg_FieldSignLoaded)": no such varialble surfer: Error sending tcl command tkm_SetMenuItemGroupStatus mg_FieldMaskLoaded 0:
can't read "glMenuGroups(mg_FieldMaskLoaded)": no such variable tksurfer: run tcl script: /tmp/TmpTclSurf.13311
Unfortunately these error messages mean nothing to me, so I was wondering if anyone else had seen them before. Thanks very much.
Xander
---- Original message ----
Date: Thu, 01 Sep 2005 11:08:52 -0400 From: Nick Schmansky nicks@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Lib prob? To: xmeadow@uchicago.edu, "Fornito, Alexander"
Cc: Freesurfer Mailing List freesurfer@nmr.mgh.harvard.edu
Alex and Xander,
> From reading the error messages in your emails, it
appears that
freesurfer is not able to find the tcl/tk, and tix libraries
on your
platform.
We have been working on trying to provide a seamless solution
to the
problem of freesurfer finding the external libraries upon
which it
depends, on the varied platforms that it supports.
To help, later today, a new 'dev' build for rh9 that includes
many of
the necessary libraries will be posted for download. This is
not a
'stable' release (which is still undergoing testing), but a 'development' (dev) build, so it is still possible to have
installation
problems, but hopefully it will install and work for you. I
will email
you again when it is ready, and your patience is appreciated.
In the meantime, I've attached a script, called
'fs_lib_check', which
will check your system for the libraries that freesurfer
requires. I'm
curious to know the results of its output for your systems.
Just type
'fs_lib_check' to run it, and 'fs_lib_check --help' for help
text.
Nick
On Thu, 2005-09-01 at 17:06 +1000, Fornito, Alexander wrote: > Hi, > We've recently installed the
freesurfer-Linux-rh9-dev20050729.tar.gz distribution along with fs_supportlibs.tar.gz.
> csurf works ok, but if i try to run tksurfer, I get the
error message below. We'd appreciate any help as we've been stuck for a while.
> Thanks! > > tksurfer 1000027 rh white > surfer: current subjects dir:
/data/flanders/work/alex/freesurfer/subjects
> surfer: not in "scripts" dir ==> using cwd for session root > surfer: session root data dir ($session) set to: > surfer: /data/flanders/work/alex/freesurfer/subjects > surfer: Reading header info from
/data/flanders/work/alex/freesurfer/subjects/1000027/mri/T1/COR-.info
> INFO: Volume /tmp/mritotal_17663/orig_8_dxyz.mnc cannot be
found.
> INFO: Volume /tmp/mritotal_17663/orig_8_dxyz.mnc cannot be
found.
> surfer: vertices=152190, faces=304376 > surfer: single buffered window > Xlib: extension "XFree86-DRI" missing on display ":0.0". > Tix_Init failed: version conflict for package "Tcl": have
8.3, need 8.4
> surfer: using interface
/usr/local/freesurfer-linux9/lib/tcl/tksurfer.tcl
> Reading /usr/local/freesurfer-linux9/lib/tcl/tkm_common.tcl > Reading
/usr/local/freesurfer-linux9/lib/tcl/tkm_wrappers.tcl
> Reading /usr/local/freesurfer-linux9/lib/tcl/fsgdfPlot.tcl > couldn't load file "/usr/lib/libtix8.1.8.4.so":
/usr/lib/libtix8.1.8.4.so: cannot open shared object file: No such file or directorysurfer: Error sending tcl command UpdateUndoItemLabel "Nothing to Undo":
> invalid command name "UpdateUndoItemLabel" > surfer: Error sending tcl command
tkm_SetMenuItemGroupStatus mg_OriginalVSetLoaded 1:
> can't read "glMenuGroups(mg_OriginalVSetLoaded)": no such
variable
> surfer: Error sending tcl command
tkm_SetMenuItemGroupStatus mg_InflatedVSetLoaded 0:
> can't read "glMenuGroups(mg_InflatedVSetLoaded)": no such
variable
> surfer: Error sending tcl command
tkm_SetMenuItemGroupStatus mg_WhiteVSetLoaded 0:
> can't read "glMenuGroups(mg_WhiteVSetLoaded)": no such
variable
> surfer: Error sending tcl command
tkm_SetMenuItemGroupStatus mg_PialVSetLoaded 0:
> can't read "glMenuGroups(mg_PialVSetLoaded)": no such
variable
> surfer: Error sending tcl command
tkm_SetMenuItemGroupStatus mg_TimeCourseLoaded 0:
> can't read "glMenuGroups(mg_TimeCourseLoaded)": no such
variable
> surfer: Error sending tcl command
tkm_SetMenuItemGroupStatus mg_OverlayLoaded 0:
> can't read "glMenuGroups(mg_OverlayLoaded)": no such
variable
> surfer: Error sending tcl command
tkm_SetMenuItemGroupStatus mg_CurvatureLoaded 0:
> can't read "glMenuGroups(mg_CurvatureLoaded)": no such
variable
> surfer: Error sending tcl command
tkm_SetMenuItemGroupStatus mg_LabelLoaded 0:
> can't read "glMenuGroups(mg_LabelLoaded)": no such variable > surfer: Error sending tcl command
tkm_SetMenuItemGroupStatus mg_FieldSignLoaded 0:
> can't read "glMenuGroups(mg_FieldSignLoaded)": no such
variable
> surfer: Error sending tcl command
tkm_SetMenuItemGroupStatus mg_FieldMaskLoaded 0:
> can't read "glMenuGroups(mg_FieldMaskLoaded)": no such
variable
> % surfer: Error sending tcl command MoveToolWindow 663 670: > invalid command name "MoveToolWindow" > surfer: Error sending tcl command MoveToolWindow 663 670: > invalid command name "MoveToolWindow" > surfer: Error sending tcl command MoveToolWindow 663 670: > invalid command name "MoveToolWindow" > > > > > > > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > ________________ fs_lib_check (4k bytes)
freesurfer@nmr.mgh.harvard.edu
-
Nick Schmansky -
Xander Meadow -
xmeadow＠uchicago.edu