Hello Bruce et al,
I have a dataset processed in 5.0. Can I use the Hippocampal Sub-Field Segmentation tools of 5.1 to process these?
thanks so much,
Alan
BIDMC/ Psychiatry
I believe so, but Koen is the one who would know for sure
Bruce On Wed, 2 Nov 2011, Alan Francis wrote:
Hello Bruce et al, I have a dataset processed in 5.0. Can I use the Hippocampal Sub-Field Segmentation tools of 5.1 to process these? thanks so much, Alan BIDMC/ Psychiatry
Thats an interesting suggestion, givien my recently reported issues with the talairach in FreeSurfer 5.1. - Joshua Lee Graduate Student Center for Mind and Brain & Department of Psychology University of California, Davis 530.747.3805
On Wed, Nov 2, 2011 at 11:41 AM, Bruce Fischl fischl@nmr.mgh.harvard.eduwrote:
I believe so, but Koen is the one who would know for sure
Bruce
On Wed, 2 Nov 2011, Alan Francis wrote:
Hello Bruce et al,
I have a dataset processed in 5.0. Can I use the Hippocampal Sub-Field Segmentation tools of 5.1 to process these?
thanks so much,
Alan
BIDMC/ Psychiatry
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Hi Allan and Joshua,
The hippocampal subfield segmentation really just uses a few output files generated by the usual FreeSurfer volumetric stream, so the short answer is that it should be perfectly possible to use 5.1 to do hippocampal subfield segmentation on FreeSurfer results processed with 5.0.
Of course, 5.1 likely yields slightly different FreeSurfer ouput files than 5.0, so that the hippocampal subfield segmentation that relies on those will be different from a "fresh" run of 5.1 accordingly...
Hope this helps,
Koen
On Wed, Nov 2, 2011 at 1:28 PM, Joshua Lee jkilee@ucdavis.edu wrote:
Thats an interesting suggestion, givien my recently reported issues with the talairach in FreeSurfer 5.1.
Joshua Lee Graduate Student Center for Mind and Brain & Department of Psychology University of California, Davis 530.747.3805
On Wed, Nov 2, 2011 at 11:41 AM, Bruce Fischl fischl@nmr.mgh.harvard.edu wrote:
I believe so, but Koen is the one who would know for sure
Bruce On Wed, 2 Nov 2011, Alan Francis wrote:
Hello Bruce et al,
I have a dataset processed in 5.0. Can I use the Hippocampal Sub-Field Segmentation tools of 5.1 to process these?
thanks so much,
Alan
BIDMC/ Psychiatry
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
freesurfer@nmr.mgh.harvard.edu
-
Alan Francis -
Bruce Fischl -
Joshua Lee -
Koen Van Leemput