If you look at the recon-all.log file, you will see

Include the flag -cw256 with recon-all

So try that

On 6/22/2020 10:03 AM, Frank Chau wrote:

External Email - Use Caution

**

Dear Freesurfer experts,

I ran Recon-all on a batch of subject. Only one Recon-all error results were generated which the process just last for few minutes. There just 2 mgz file in mri folder of the subject output directory were generated. I re-run recon-all on the same subject, same result was got again. May I know the cause of this error?

I upload the output result, log history and the T1.nii to the following share link, please feel free the check them:

https://www.dropbox.com/sh/lhbzct444n8ek8z/AADbtfyYEBNWZ4yYXPw7ejmwa?dl=0

https://www.dropbox.com/sh/lhbzct444n8ek8z/AADbtfyYEBNWZ4yYXPw7ejmwa?dl=0

Thank you.

Regards

Frank

---

*FRANK  C Y CHAU*

Research assistant

Division of Neurology

Department of Medicine

Tel: +852 6340 2553

Fax: 2872 5828

E-mail : cyfrank@hku.hk mailto:cyfrank@hku.hk

Rm 304, 3/F, New Clinical building, Queen Mary Hospital, 102 Pokfulam Road, Hong Kong

---

Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer