On 11/8/2022 11:27 AM, Addison, Reuben wrote:

Just as a quick verification and follow up using

1. Specifying the number of components eg. if I want 5 -nuisreg the various components I want to regress out “-comp 6 – comp 7 comp 8 comp 9

not sure what you mean here. The format is -nuisreg filename Ncomponents

2. Also just a follow up, how do I go ahead and run an ICA instead of the regular connectivity analysis

I don't have ICA in fsfast

*From: *freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Douglas N. Greve dgreve@mgh.harvard.edu *Date: *Tuesday, November 8, 2022 at 9:02 AM *To: *freesurfer@nmr.mgh.harvard.edu freesurfer@nmr.mgh.harvard.edu *Subject: *Re: [Freesurfer] acompcor in fsfast

When you run fcseed-sess, specify -pca instead of -mean. When you run mkanaysis-sess, specify the number of components you want when specify -nuisreg

On 10/26/2022 6:29 PM, Addison, Reuben wrote:

Hi,

I am running resting State functional connectivity and I want to
run everything in freesurfer and fsfast.

I wanted to know is it is possible to run

acompcor in fsfast. If so, how do I go about it.

Thanks.

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