Here's the command line and screen output:

[cpratoom@uwcemif$ SE1]recon-all -i EXP0001.dcm -s anon2 INFO: SUBJECTS_DIR is /home/uwcem/cpratoom/FSFsubjects Actual FREESURFER_HOME /opt/ecco/software/commercial/freesurfer/4.0.1/i686/linux Linux uwcemif 2.6.14-hardened-r2 #1 PREEMPT Fri Dec 30 01:40:29 CST 2005 i686 Intel(R) Pentium(R) 4 CPU 1.70GHz GenuineIntel GNU/Linux /home/uwcem/cpratoom/FSFsubjects/anon2

mri_convert /home/uwcem/cpratoom/BrainMRI/PA2/SE1/EXP0001.dcm /home/uwcem/cpratoom/FSFsubjects/anon2/mri/orig/001.mgz

mri_convert /home/uwcem/cpratoom/BrainMRI/PA2/SE1/EXP0001.dcm /home/uwcem/cpratoom/FSFsubjects/anon2/mri/orig/001.mgz file not found or unknown file type for file /home/uwcem/cpratoom/BrainMRI/PA2/SE1/EXP0001.dcm Linux uwcemif 2.6.14-hardened-r2 #1 PREEMPT Fri Dec 30 01:40:29 CST 2005 i686 Intel(R) Pentium(R) 4 CPU 1.70GHz GenuineIntel GNU/Linux

recon-all exited with ERRORS at Wed Nov 7 06:54:51 CST 2007

I also used mri_probedicom and obtained the following:

[cpratoom@uwcemif$ SE1]mri_probedicom --i EXP0001.dcm ERROR: EXP0001.dcm is not a dicom file

The image in question (EXP0001.dcm) is attached with this email. Thanks. Earl

Bruce Fischl wrote:

can you send us your entire command line?

On Tue, 6 Nov 2007, Earl Zastrow wrote:

...

Hi, I'm a new user and I'm having problem with some of the dicom data sets I have. Namely, I got the following error message when I try to convert some of the data sets to .mgz: file not found or unknown file type for file /home/uwcem/cpratoom/BrainMRI/PA2/SE1/EXP0001.dcm

I looked at the dicom info of EXP0001.dcm and discovered that the Manufacturer field is blank, compare to the one that did convert to .mgz without errors. Does that have anything to do with the error that I got? Thank you for your time.

Regards, Earl Zastrow

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oops. Sorry Doug Greve wrote:

I don't think the image was attached.

doug

Earl Zastrow wrote:

...

Here's the command line and screen output:

[cpratoom@uwcemif$ SE1]recon-all -i EXP0001.dcm -s anon2 INFO: SUBJECTS_DIR is /home/uwcem/cpratoom/FSFsubjects Actual FREESURFER_HOME /opt/ecco/software/commercial/freesurfer/4.0.1/i686/linux Linux uwcemif 2.6.14-hardened-r2 #1 PREEMPT Fri Dec 30 01:40:29 CST 2005 i686 Intel(R) Pentium(R) 4 CPU 1.70GHz GenuineIntel GNU/Linux /home/uwcem/cpratoom/FSFsubjects/anon2

mri_convert /home/uwcem/cpratoom/BrainMRI/PA2/SE1/EXP0001.dcm /home/uwcem/cpratoom/FSFsubjects/anon2/mri/orig/001.mgz

mri_convert /home/uwcem/cpratoom/BrainMRI/PA2/SE1/EXP0001.dcm /home/uwcem/cpratoom/FSFsubjects/anon2/mri/orig/001.mgz file not found or unknown file type for file /home/uwcem/cpratoom/BrainMRI/PA2/SE1/EXP0001.dcm Linux uwcemif 2.6.14-hardened-r2 #1 PREEMPT Fri Dec 30 01:40:29 CST 2005 i686 Intel(R) Pentium(R) 4 CPU 1.70GHz GenuineIntel GNU/Linux

recon-all exited with ERRORS at Wed Nov 7 06:54:51 CST 2007

I also used mri_probedicom and obtained the following:

[cpratoom@uwcemif$ SE1]mri_probedicom --i EXP0001.dcm ERROR: EXP0001.dcm is not a dicom file

The image in question (EXP0001.dcm) is attached with this email. Thanks. Earl

Bruce Fischl wrote:

...

can you send us your entire command line?

On Tue, 6 Nov 2007, Earl Zastrow wrote:

...

Hi, I'm a new user and I'm having problem with some of the dicom data sets I have. Namely, I got the following error message when I try to convert some of the data sets to .mgz: file not found or unknown file type for file /home/uwcem/cpratoom/BrainMRI/PA2/SE1/EXP0001.dcm

I looked at the dicom info of EXP0001.dcm and discovered that the Manufacturer field is blank, compare to the one that did convert to .mgz without errors. Does that have anything to do with the error that I got? Thank you for your time.

Regards, Earl Zastrow

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